View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21507_high_4 (Length: 346)
Name: NF21507_high_4
Description: NF21507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21507_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 35331420 - 35331596
Alignment:
| Q |
18 |
aatataaagatccatatgtgactatcattattattcatactgtacaaaaagaaaatatacaattattttggttgaaaa----taacaattagcaagttga |
113 |
Q |
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| T |
35331420 |
aatataaagatccatatgtgactatcattattattcataccgtacaaaaagaaaatatacaattattttggttgaaaaagtataacaattagcaagtgga |
35331519 |
T |
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| Q |
114 |
atttgatatccaaggttgaaaagagcagggtggcaaaacaattttcacttcacatatgaaaca--ccaaattttcag |
188 |
Q |
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| T |
35331520 |
atttgatatccaaggttgaaaagagcaggatggcaaaacaattttcacttcacatatgaaacactccaaattttcag |
35331596 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 35331662 - 35331749
Alignment:
| Q |
254 |
tgttccaatgccttttgtcagctaaatgttccagttcttatgg-----taagctgcataaaattaaagtaaactaaaacctccctatg |
336 |
Q |
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| T |
35331662 |
tgttccaatgccttttgtcagctaaatgttccagttcttatggttaaataagctgcataaaattaaagtaaactaaaacctccctatg |
35331749 |
T |
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