View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21507_high_5 (Length: 319)
Name: NF21507_high_5
Description: NF21507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21507_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 1108696 - 1108983
Alignment:
| Q |
20 |
tgctcgtcagtccattgtctcggcgttccatgaaggacaaagcggagtttacgtgctccttgtatgagccttttagagattctctgaaatacatcatggt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1108696 |
tgctcgtcagtccattgtctcggcgttccatgaaggacaaagcggagtttacgtgctccttgtatgagccttttagagattctctcaaatacatcatggt |
1108795 |
T |
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| Q |
120 |
ttgttaagtatgcaccagttgagttcaaaccaacatcaacataatgaatctcactgatgctgttcagtaaggcttcctttgtttgaggtactatggaaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1108796 |
ttgttaagtatgcaccagttgagttcaaaccaacatcaacataatgaatctcactgatgctgttcagtaaggcttcctttgtttgaggtactatggaaat |
1108895 |
T |
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| Q |
220 |
ctcctcatcaactgaattcatattagatccaatatctgcgaagccaagttcagtaactatctgattaagtactgttccacctttgcta |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1108896 |
ctcctcatcaactgaattcacattagatccaatatctgcaaagccaagttcagtaactatctgattaagtactgttccacctttgcta |
1108983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 1092523 - 1092811
Alignment:
| Q |
20 |
tgctcgtcagtccattgtctcggcgttccatgaaggacaaagcggagtttacgtgctccttgtatgagccttttagagattctctgaaatacatcatggt |
119 |
Q |
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||||||||||||||||| ||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
1092523 |
tgctcgtcagtccattgcctcagcgttccatgaagcacaaaacggagttggcgtgctccttgtatgagccttttggagattctctcaaatacatcatggt |
1092622 |
T |
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| Q |
120 |
ttgttaagtatgcaccagttgagttcaaaccaacatcaacataatgaatctcactgatgctgttcagtaaggcttcctttgtttgaggtac----tatgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||| |||| |
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| T |
1092623 |
ttgttaagtatgcaccagttgagttcaaaccaacatcaacataatgaatctcactgatgctgttcagtaaggtttcttttgttttaagtactatatatgc |
1092722 |
T |
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| Q |
216 |
aaatctcctcatcaactgaattcatattagatccaatatctgcgaagccaagttcagtaactatctgattaagtactgttccacctttgcta |
307 |
Q |
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|||| |||| | ||||| ||| ||||| ||| |||||| |||||||||||||||||||||||||||||| ||| || || ||||||||| |
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| T |
1092723 |
aaat---gtcatgagctgaactcacattaggtccgatatctacgaagccaagttcagtaactatctgattaattacagtcccgcctttgcta |
1092811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 722411 - 722660
Alignment:
| Q |
20 |
tgctcgtcagtccattgtctcggcgttccatgaaggacaaagcggagtttacgtgctccttgtatgagccttttagagattctctgaaatacatcatggt |
119 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| | |||| ||| ||||| |||||||||||||| |||||||||| |||||||||| ||| |
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| T |
722411 |
tgctcgtcagtccaatgtctcggcgttccatgaagaacaaaatgaagttgacgcgctccatgtatgagccttttcgagattctctcaaatacatcacggt |
722510 |
T |
|
| Q |
120 |
ttgttaagtatgcaccagttgagttcaaaccaacatcaacataatgaatctcactgatgctgttcagtaaggcttcctttgtttgaggtactatggaaat |
219 |
Q |
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||| ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||| || ||||||||||| ||||||||||||||| |
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| T |
722511 |
ttgctaagtatgcaccaattgagttcaaaccgacatcaacataatgaacctcactgatgctgtttagtatggtttcctttgttttaggtactatggaaat |
722610 |
T |
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| Q |
220 |
ctcctcatcaactgaattcatattagatccaatatc-tgcgaagccaagttca |
271 |
Q |
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||||||||||||||||| ||||||| ||||| | || ||||||||||||| |
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| T |
722611 |
---ctcatcaactgaattcacattagattcaataccttgagaagccaagttca |
722660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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