View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21507_high_6 (Length: 314)
Name: NF21507_high_6
Description: NF21507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21507_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 32036600 - 32036315
Alignment:
| Q |
10 |
agtgagatgaaaggcataaagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttg |
109 |
Q |
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| T |
32036600 |
agtgaaatgaaaggcataaagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttg |
32036501 |
T |
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| Q |
110 |
caccttacttccattctaatgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32036500 |
caccttacttccattctaatgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaa |
32036401 |
T |
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| Q |
210 |
acaaagagaagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatggatgcattggttccatag |
295 |
Q |
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| T |
32036400 |
acaaagagaagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttacggatgcattggttccatag |
32036315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 28 - 284
Target Start/End: Complemental strand, 35808949 - 35808693
Alignment:
| Q |
28 |
aagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttacttccattcta |
127 |
Q |
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||||||||||| ||| | ||||| || ||||||||||| |||||||| ||||||||||||||| |||| |||| ||||||| || ||||| | || |
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| T |
35808949 |
aagggttatgaaccaaggtcaagttcctcttgtgcagcctgcaaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccg |
35808850 |
T |
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| Q |
128 |
atgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagt |
227 |
Q |
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| T |
35808849 |
atgagtgcaagaaattcgcgaaagttcacaaagtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgt |
35808750 |
T |
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| Q |
228 |
gaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatggatgcat |
284 |
Q |
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||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
35808749 |
gaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcat |
35808693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 600801 - 600908
Alignment:
| Q |
151 |
gttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagtgaattctcttgcttatgaagctg |
250 |
Q |
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||||||||| ||||||| ||||||||||||||||| || || | |||||| | | ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
600801 |
gttcacaaaatatttggtgcaagcaatgttagcaaaattctaaatgaagtcttacctcatcaaagagaagatacagtgaattctctagcttatgaagctg |
600900 |
T |
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| Q |
251 |
aagcaagg |
258 |
Q |
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| T |
600901 |
aagcaagg |
600908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 591284 - 591351
Alignment:
| Q |
211 |
caaagagaagacacagtgaattctcttgcttatgaagctgaagcaaggcttagagacccagtttatgg |
278 |
Q |
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| T |
591284 |
caaagagaagatacggtgaattctctagcttatgaagctgaagcaaggattaaagatccagtgtatgg |
591351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 278
Target Start/End: Complemental strand, 12360798 - 12360671
Alignment:
| Q |
151 |
gttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagtgaattctcttgcttatgaagctg |
250 |
Q |
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||||||||| ||||||| ||||||||||| || || | || | |||||||| | | | ||||| ||||| ||||||| ||||||||||||||||||| |
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| T |
12360798 |
gttcacaaaatatttggtgcaagcaatgtaagtaaacttctgaatgaagtgcaaccacatcaaagggaagatgcagtgaactctcttgcttatgaagctg |
12360699 |
T |
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| Q |
251 |
aagcaaggcttagagacccagtttatgg |
278 |
Q |
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| |||||| | | ||| ||||||||||| |
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| T |
12360698 |
aggcaaggataaaagatccagtttatgg |
12360671 |
T |
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