View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21507_low_10 (Length: 250)

Name: NF21507_low_10
Description: NF21507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21507_low_10
NF21507_low_10
[»] chr3 (19 HSPs)
chr3 (1-233)||(20016182-20016412)
chr3 (87-233)||(19956075-19956221)
chr3 (87-229)||(24839959-24840101)
chr3 (96-221)||(19848990-19849115)
chr3 (96-221)||(20036596-20036721)
chr3 (13-233)||(20046040-20046257)
chr3 (86-233)||(19812270-19812414)
chr3 (116-233)||(19853532-19853649)
chr3 (94-233)||(19858070-19858209)
chr3 (87-233)||(19838384-19838530)
chr3 (86-233)||(19943710-19943853)
chr3 (113-233)||(30914660-30914780)
chr3 (114-233)||(26647022-26647138)
chr3 (96-184)||(19951124-19951212)
chr3 (96-173)||(19989522-19989599)
chr3 (116-184)||(19818577-19818645)
chr3 (118-183)||(26653174-26653239)
chr3 (13-63)||(19838301-19838351)
chr3 (162-227)||(19971677-19971742)
[»] chr4 (2 HSPs)
chr4 (13-185)||(6397767-6397939)
chr4 (13-175)||(6398178-6398340)
[»] chr8 (5 HSPs)
chr8 (116-233)||(22685664-22685778)
chr8 (96-189)||(22652113-22652206)
chr8 (114-185)||(22689684-22689755)
chr8 (116-233)||(11564115-11564232)
chr8 (195-233)||(22651874-22651912)
[»] chr1 (1 HSPs)
chr1 (96-233)||(1717214-1717348)
[»] chr5 (2 HSPs)
chr5 (117-233)||(9815058-9815171)
chr5 (114-233)||(26354908-26355027)
[»] chr7 (8 HSPs)
chr7 (26-131)||(12581117-12581222)
chr7 (128-180)||(12581424-12581476)
chr7 (128-183)||(12497241-12497296)
chr7 (128-183)||(12521106-12521161)
chr7 (26-132)||(12496933-12497039)
chr7 (26-132)||(12520798-12520904)
chr7 (128-185)||(12519821-12519878)
chr7 (128-185)||(12580110-12580167)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 20016412 - 20016182
Alignment:
Q  1 ttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggat 100  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016412 ttgaagacacaaaaatgagag--gtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggat 20016315  T
Q  101 ggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016314 ggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaa 20016215  T
Q  201 agttgtttgtttccgattgctattcatcttgct 233  Q
    |||||||||||||||||||||||||||||||||    
T  20016214 agttgtttgtttccgattgctattcatcttgct 20016182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 87 - 233
Target Start/End: Original strand, 19956075 - 19956221
Alignment:
Q  87 acatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaat 186  Q
    |||||| | ||||||||||| |||  |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  19956075 acatcactatggatggatattttcattgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctcataaat 19956174  T
Q  187 actcttccgtgaaaagttgtttgtttccgattgctattcatcttgct 233  Q
    | |||||||||||||||| ||||||||| |||| | |||||||||||    
T  19956175 attcttccgtgaaaagttatttgtttcctattgttgttcatcttgct 19956221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 87 - 229
Target Start/End: Complemental strand, 24840101 - 24839959
Alignment:
Q  87 acatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaat 186  Q
    |||||| ||||||||||||| |||   ||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24840101 acatcagtgtggatggatattttcatcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaat 24840002  T
Q  187 actcttccgtgaaaagttgtttgtttccgattgctattcatct 229  Q
    |||||   |||||| ||| |||||||||  ||||| |||||||    
T  24840001 actctctagtgaaatgttctttgtttcctgttgctgttcatct 24839959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 19848990 - 19849115
Alignment:
Q  96 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccg 195  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||| ||  |    
T  19848990 tggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttgg 19849089  T
Q  196 tgaaaagttgtttgtttccgattgct 221  Q
    ||||||||| ||||||||| ||||||    
T  19849090 tgaaaagttctttgtttcctattgct 19849115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 20036721 - 20036596
Alignment:
Q  96 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccg 195  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||| ||  |    
T  20036721 tggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttgg 20036622  T
Q  196 tgaaaagttgtttgtttccgattgct 221  Q
    ||||||||| ||||||||| ||||||    
T  20036621 tgaaaagttctttgtttcctattgct 20036596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 20046040 - 20046257
Alignment:
Q  13 aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgc 112  Q
    ||||||||||||| ||||| |||||||||| || |||  |||| ||||| ||| ||||  |  |||| || ||||||||| | |||||||||||||||      
T  20046040 aaatgagagaggtggaaaataaattgatccatgaaaggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcat 20046139  T
Q  113 tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgttt 212  Q
     ||||||||||||||||||||||| ||||| || ||| |||||||| |||||||||||||||| ||||||||| |   |   ||||||| ||||||||||    
T  20046140 cgataaaggtagtgaaattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaaaa---tatggtgaaaaattgtttgttt 20046236  T
Q  213 ccgattgctattcatcttgct 233  Q
     | ||||||||| ||||||||    
T  20046237 tctattgctattaatcttgct 20046257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 19812270 - 19812414
Alignment:
Q  86 cacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 185  Q
    ||||||||  |||||  |||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  19812270 cacatcaaaatggatcaatattttcgttggtaaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaa 19812369  T
Q  186 tactcttccgtgaaaagttgtttgtttccgattgctattcatcttgct 233  Q
    ||   ||  |||||||  | |||||||||||| ||||||| |||||||    
T  19812370 ta---tttggtgaaaaagtctttgtttccgatcgctattcttcttgct 19812414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 19853532 - 19853649
Alignment:
Q  116 taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||| |   |||||||| | |||||||||     
T  19853532 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcatagatactttattgtgaaaagatctttgtttcct 19853631  T
Q  216 attgctattcatcttgct 233  Q
    |||||||||| |||||||    
T  19853632 attgctattcgtcttgct 19853649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 19858070 - 19858209
Alignment:
Q  94 tgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttc 193  Q
    ||||||||||||| |||   |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||| |      
T  19858070 tgtggatggatattttcatcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcctaatagatactttaa 19858169  T
Q  194 cgtgaaaagttgtttgtttccgattgctattcatcttgct 233  Q
     |||||||| | ||||||||| |||||||||  |||||||    
T  19858170 tgtgaaaagatctttgtttcctattgctattggtcttgct 19858209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 233
Target Start/End: Original strand, 19838384 - 19838530
Alignment:
Q  87 acatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaat 186  Q
    |||||| | ||||||||||| |||   ||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||| || ||     
T  19838384 acatcactatggatggatattttcatcgataaaggtagcgaaattgaacatgaagcttttctagctacttggttgtcaatttttgtttttcctaatcaac 19838483  T
Q  187 actcttccgtgaaaagttgtttgtttccgattgctattcatcttgct 233  Q
    |||||| ||||||||| | ||||||||| |||| | |||||||||||    
T  19838484 actcttgcgtgaaaagctttttgtttccaattgttgttcatcttgct 19838530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 19943710 - 19943853
Alignment:
Q  86 cacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 185  Q
    ||||||| ||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||| ||||||| |    
T  19943710 cacatcagtgtggatggatattttcatcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaa--tttgtttttcctcataga 19943807  T
Q  186 tactcttccgtgaaaagttgtttgtttccgattgctattcatcttgct 233  Q
    |||  |   |||||||||  | ||||||| |||||| |||||||||||    
T  19943808 tacaatgtggtgaaaagt--tctgtttcctattgctgttcatcttgct 19943853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 30914660 - 30914780
Alignment:
Q  113 tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgttt 212  Q
    |||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| ||| |   ||  |||||||||| |||||||    
T  30914660 tgataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctcacaaaga---tttggtgaaaagttttttgttt 30914756  T
Q  213 ccgattg---ctattcatcttgct 233  Q
    || ||||   ||||||||||||||    
T  30914757 cctattgcgcctattcatcttgct 30914780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 26647022 - 26647138
Alignment:
Q  114 gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttc 213  Q
    |||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| |||||| ||||||  | |   ||  |||||||||||||||||||    
T  26647022 gataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctcatctaaa---tttggtgaaaagttgtttgtttc 26647118  T
Q  214 cgattgctattcatcttgct 233  Q
    | |||||| |||||||||||    
T  26647119 ctattgctgttcatcttgct 26647138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 19951124 - 19951212
Alignment:
Q  96 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataa 184  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| || |||| ||||||| ||||| |||||||||| ||| ||||    
T  19951124 tggatggatattttcactgataaaggtagtgaaattgaacatgaagccttccttgttacttggttgtcactttttgtttttcctaataa 19951212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 19989522 - 19989599
Alignment:
Q  96 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgtt 173  Q
    ||||||||| | |||  ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  19989522 tggatggatgttttcattgataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtcaatttttgtt 19989599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 19818577 - 19818645
Alignment:
Q  116 taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataa 184  Q
    ||||||||  ||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||    
T  19818577 taaaggtaccgaaattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataa 19818645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 26653174 - 26653239
Alignment:
Q  118 aaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcata 183  Q
    |||||||||||||||||||||| ||||| |||||  ||||| |||||||||||||||| |||||||    
T  26653174 aaggtagtgaaattgaacatgatgcattccttgcagcttggttgtcaatttttgtttttcctcata 26653239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 19838301 - 19838351
Alignment:
Q  13 aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttacta 63  Q
    ||||||||||||| |||||||||||||||||| ||  | ||||||||||||    
T  19838301 aaatgagagaggtggaaaacaaattgatccttacattaaagcaacttacta 19838351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 19971677 - 19971742
Alignment:
Q  162 tcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccgattgctattcat 227  Q
    ||||||||||||||  |||||| ||||| |   |||||||||| ||||||||| ||||||||||||    
T  19971677 tcaatttttgttttttctcatagatactttatagtgaaaagttctttgtttcctattgctattcat 19971742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 6397939 - 6397767
Alignment:
Q  13 aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgc 112  Q
    ||||| || |||| ||||| ||||||||||| | |||| |||||||||| ||| ||||  || |||| || |||| |||| | |||||||||||||||      
T  6397939 aaatgtgataggtggaaaataaattgatcctagaaagaaagcaacttacaaataggaatgaaggtcatgcttacatatcattatggatggatatgttcat 6397840  T
Q  113 tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 185  Q
     ||||||||||||||||||||||||||||| || |||||||| ||| ||||||||| || ||| |||| ||||    
T  6397839 cgataaaggtagtgaaattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaa 6397767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 6398178 - 6398340
Alignment:
Q  13 aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgc 112  Q
    ||||||||||||| ||||||||||||||||| | |||| || ||||||| |||  |||  || ||| | | |||||||   | ||||||||||||||       
T  6398178 aaatgagagaggtggaaaacaaattgatcctagaaagaaagaaacttaccaatacgaataaaggtcccacttacacatagttatggatggatatgtttat 6398277  T
Q  113 tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgtttt 175  Q
      |||||||||||||||||||||||||||| || ||||||| |||| ||| ||||||||||||    
T  6398278 ctataaaggtagtgaaattgaacatgaagccttccttgctaattggttgttaatttttgtttt 6398340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 22685778 - 22685664
Alignment:
Q  116 taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccg 215  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||| |||||||||     ||  ||||||| || | ||||||||    
T  22685778 taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaa---attttggtgaaaacttctatgtttccg 22685682  T
Q  216 attgctattcatcttgct 233  Q
    ||||||||||||||||||    
T  22685681 attgctattcatcttgct 22685664  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 22652206 - 22652113
Alignment:
Q  96 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatact 189  Q
    ||||||||||| |||   ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||  |||||| |||||    
T  22652206 tggatggatattttcatcgataaaggtagtgaaattgaacatgaagcgttccttgctacttggttgtcaatttttgtttttgctcatagatact 22652113  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 22689755 - 22689684
Alignment:
Q  114 gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 185  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  22689755 gataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaa 22689684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 11564232 - 11564115
Alignment:
Q  116 taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccg 215  Q
    ||||| |||| |||||||||||||||||||  || || | ||||| || ||||||||||| |||||||||  ||  |   | ||||||| |||||||||     
T  11564232 taaagctagtaaaattgaacatgaagcattcatttctgcatggctttccatttttgtttttcctcataaaagcttgttgatcaaaagttctttgtttcct 11564133  T
Q  216 attgctattcatcttgct 233  Q
    |||||| |||||||||||    
T  11564132 attgctgttcatcttgct 11564115  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 22651912 - 22651874
Alignment:
Q  195 gtgaaaagttgtttgtttccgattgctattcatcttgct 233  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  22651912 gtgaaaagttgtttgtttcctattgctgttcatcttgct 22651874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 1717214 - 1717348
Alignment:
Q  96 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccg 195  Q
    ||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||| |||||||||    |||  |    
T  1717214 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa---gctttgg 1717310  T
Q  196 tgaaaagttgtttgtttccgattgctattcatcttgct 233  Q
    ||||||  | ||||||||| |||||| |||||||||||    
T  1717311 tgaaaaaatctttgtttcctattgctgttcatcttgct 1717348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 9815058 - 9815171
Alignment:
Q  117 aaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccga 216  Q
    ||||||||||||||||| |||||||| ||  ||||||| ||| ||||||| ||||||||  ||||||||   ||||  |||||||||| ||||||| | |    
T  9815058 aaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaa---tctttggtgaaaagttctttgttttcta 9815154  T
Q  217 ttgctattcatcttgct 233  Q
    |||||||||||||||||    
T  9815155 ttgctattcatcttgct 9815171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 233
Target Start/End: Complemental strand, 26355027 - 26354908
Alignment:
Q  114 gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttc 213  Q
    ||||||||||||||| ||||||||||||||||  ||| | ||||| | |||||||||||||| |||   |||| |   |  |||||||||| ||||||||    
T  26355027 gataaaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttc 26354928  T
Q  214 cgattgctattcatcttgct 233  Q
    | ||||||||||||||||||    
T  26354927 ctattgctattcatcttgct 26354908  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 12581222 - 12581117
Alignment:
Q  26 agaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagt 125  Q
    ||||| |||||||||||||| |||| |||||||||| ||| ||||  || |||||   ||||||||| | |||||||||||||||   |||||||||| |    
T  12581222 agaaagcaaattgatccttgaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaat 12581123  T
Q  126 gaaatt 131  Q
    ||||||    
T  12581122 gaaatt 12581117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 12581424 - 12581476
Alignment:
Q  128 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctc 180  Q
    ||||||||||||||| || |||||||||||| |||||||||||||||| ||||    
T  12581424 aattgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctc 12581476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 12497241 - 12497296
Alignment:
Q  128 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcata 183  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||||| |||||||    
T  12497241 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata 12497296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 12521106 - 12521161
Alignment:
Q  128 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcata 183  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||||| |||||||    
T  12521106 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata 12521161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 12497039 - 12496933
Alignment:
Q  26 agaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagt 125  Q
    ||||| |||| ||||||||  |||| |||||||||| ||| ||||  || |||||   ||||||||| | |||||||||||||||   |||||||||| |    
T  12497039 agaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaat 12496940  T
Q  126 gaaattg 132  Q
    |||||||    
T  12496939 gaaattg 12496933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 12520904 - 12520798
Alignment:
Q  26 agaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagt 125  Q
    ||||| |||| ||||||||  |||| |||||||||| ||| ||||  || |||||   ||||||||| | |||||||||||||||   |||||||||| |    
T  12520904 agaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaat 12520805  T
Q  126 gaaattg 132  Q
    |||||||    
T  12520804 gaaattg 12520798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 12519878 - 12519821
Alignment:
Q  128 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 185  Q
    ||||||||||||||| || |||   |||||| |||||||||||||||| |||||||||    
T  12519878 aattgaacatgaagccttccttttaacttggttgtcaatttttgtttttcctcataaa 12519821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 12580167 - 12580110
Alignment:
Q  128 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 185  Q
    |||||||||||| || || |||  ||||||| |||||||||||||||| |||||||||    
T  12580167 aattgaacatgaggccttcctttttacttggttgtcaatttttgtttttcctcataaa 12580110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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