View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21507_low_3 (Length: 483)
Name: NF21507_low_3
Description: NF21507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21507_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 8e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 220 - 466
Target Start/End: Original strand, 39995491 - 39995750
Alignment:
| Q |
220 |
tattggtttcttcataccaacctcgatatagtaaattattcccatatccatattttgtataagttccatat---------------ttataaattctaga |
304 |
Q |
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| T |
39995491 |
tattggtttcttcataccaacctcaatagagtaaattattcccat--ccttattttgtataagttccataaataaaaagtacttacttataaattctaga |
39995588 |
T |
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| Q |
305 |
agtcatcaaaacttttcttttgttgttgcatgtgtgattctctttcaatccatccatggatcacacaatgtcttgataaaaatgcttcttaaaggcatcc |
404 |
Q |
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| T |
39995589 |
agtcatcaaaacttatcttttgttgttgcatgtgtgattctctttcaatccatccatggatcacacaatgtcttgataaaaatgcttcttaaagacatcc |
39995688 |
T |
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| Q |
405 |
atatggatctcttgcagacaaataataaccaacaaagaaccatcatcattgggactaggaag |
466 |
Q |
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| T |
39995689 |
atatggatctcttgtagacaaataataaccaacaaagaaccatcatcattgggactaggaag |
39995750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 39994915 - 39995068
Alignment:
| Q |
69 |
attgcagataagaaggaggaggtggaagaatcatattgaaggatgagttgttggaatatagatgaagcaaaaatatgcatcctaagattaacaaaggttc |
168 |
Q |
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| T |
39994915 |
attgcagataagaaggaggaggtagatgaatcatattgaaggatgagttgttggaatatagatgaagc-aaaatatgcatcctaagattaac-aaggttc |
39995012 |
T |
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| Q |
169 |
ataatattacaagaggaaaaacaagattgcaatacatgattaagaaattaatattg |
224 |
Q |
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| T |
39995013 |
ataatattacaagaggaaaaacaagattgcattacatgattaagaaattaatattg |
39995068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 53037959 - 53037855
Alignment:
| Q |
349 |
tcaatccatccatggatcacacaatgtcttgataaaaatgcttcttaaaggcatccatatggatctcttgcagacaaataataaccaacaaagaaccatc |
448 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||| | |||||||| ||||||| |||||||||||| ||||| |
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| T |
53037959 |
tcaatacatccatggatcacacaatgtcttgataaaaatgcctcttgaatgcatccatatgaacctcttgcaaacaaatagcaaccaacaaagatccatc |
53037860 |
T |
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| Q |
449 |
atcat |
453 |
Q |
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||||| |
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| T |
53037859 |
atcat |
53037855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 40009164 - 40009225
Alignment:
| Q |
119 |
ttggaatatagatgaagcaaaaatatgcatcctaagattaacaaaggttcataatattacaag |
181 |
Q |
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| T |
40009164 |
ttggaatatagatgaagcaaaagtatgcatcctaagattaac-aaggtccataatattacaag |
40009225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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