View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21507_low_9 (Length: 296)
Name: NF21507_low_9
Description: NF21507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21507_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 48846137 - 48845865
Alignment:
| Q |
8 |
tgaaatgaagaaagctaaactaggatggacaagaagcttactcaggcacaacttgctcaaattatcaatgagaagcctcaagtgatccaagagtacgagt |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
48846137 |
tgaactgaagaaagctaaactaggatggacaagaagcttactcaggcacaacttgctcaaattatcaatgagaagcctcaagtgatcaaagaatacgagt |
48846038 |
T |
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| Q |
108 |
cggggaaagccattccaaatcagatgataattggcaagttggagtcttggagagagcacttggtgccaaact-cctaggaagaaatgagaaagttgattt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
48846037 |
cggggaaagccattccaaatcagatgataattggcaagttggagtcttggagagagcacttggtgccaaaatccctaggaagaaatgagaaagttgattt |
48845938 |
T |
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| Q |
207 |
gatggttgtgtatgtagttggatctattttacactgttgaagctaatctgacggctgttatgtagttggattt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48845937 |
gatggttgtgtatgtagttggatctattttacactgttgaagctaatctgacggctgttatgtagttggattt |
48845865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 275
Target Start/End: Original strand, 7016404 - 7016648
Alignment:
| Q |
24 |
aaactaggatggacaagaagcttactcaggcacaacttgctcaaattatcaatgagaagcctcaagtgatccaagagtacgagtcggggaaagccattcc |
123 |
Q |
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| T |
7016404 |
aaactaggatggacaagaagcttactcaggcacaacttgctcaaattatcagtgagaagcctcaagtgatccaggagtacgagtcggggaaagccattcc |
7016503 |
T |
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| Q |
124 |
aaatcagatgataattggcaagttggagtcttggagagagcacttggtgccaaact-cctaggaagaaatgagaaagttgatttgatggttgtgtatgta |
222 |
Q |
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| T |
7016504 |
aaatcagatgataattggcaag--------ttggagagagttcttggtgccaaactccctgggaagaaatgagacagctgatttgatggttgtgtatgta |
7016595 |
T |
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| Q |
223 |
gttggatctattttacactgttgaagctaatctgacggctgttatgtagttgg |
275 |
Q |
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| T |
7016596 |
gttggatctattttacactgttgaagctaatctgacggctgttatgtagttgg |
7016648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 64 - 279
Target Start/End: Complemental strand, 17725790 - 17725582
Alignment:
| Q |
64 |
tcaaattatcaatgagaagcctcaagtgatccaagagtacgagtcggggaaagccattccaaatcagatgataattggcaagttggagtcttggagagag |
163 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
17725790 |
tcaaattatcaatgagaagcctcaagtgatccacgagtacgagtcggggaaagccattccaaatcagcatataattggcaagttggag--------agag |
17725699 |
T |
|
| Q |
164 |
cacttggtgccaaactcc-taggaagaaatgagaaagttgatttgatggttgtgtatgtagttggatctattttacactgttgaagctaatctgacggct |
262 |
Q |
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| T |
17725698 |
ctcttggtgccaaactccgtgggaagaaatgagaaagttaatttgatggctgtgtatgtagttagatctattttacactgttaaagctaatctgacggct |
17725599 |
T |
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| Q |
263 |
gttatgtagttggattt |
279 |
Q |
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| T |
17725598 |
attatgtagttggattt |
17725582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 68 - 279
Target Start/End: Complemental strand, 35376439 - 35376234
Alignment:
| Q |
68 |
attatcaatgagaagcctcaagtgatccaagagtacgagtcggggaaagccattccaaatcagatgataattggcaagttggagtcttggagagagcact |
167 |
Q |
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||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |
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| T |
35376439 |
attatcaatgagaagcctcaagttatccaggagtatgagtcggggaaagccattccaaatcagcagataattggcaagttggag--------agagctct |
35376348 |
T |
|
| Q |
168 |
tggtgccaaactcc-taggaagaaatgagaaa-gttgatttgatggttgtgtatgtagttggatctattttacactgttgaagctaatctgacggctgtt |
265 |
Q |
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||||||||| || | | ||||||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35376347 |
tggtgccaagctgcgtgggaagaaatgagaaaagctaatttgatggctgtgtatgtagttggatctattttacactgttgaagctaatctgacggctgtt |
35376248 |
T |
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| Q |
266 |
atgtagttggattt |
279 |
Q |
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||||||||| |||| |
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| T |
35376247 |
atgtagttgaattt |
35376234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 35376570 - 35376532
Alignment:
| Q |
29 |
aggatggacaagaagcttactcaggcacaacttgctcaa |
67 |
Q |
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| T |
35376570 |
aggacggaaaagaagcttactcaggcacaacttgctcaa |
35376532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 31044633 - 31044713
Alignment:
| Q |
71 |
atcaatgagaagcctcaagtgatccaagagtacgagtcggggaaagccattccaaatcagatgataattggcaagttggag |
151 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
31044633 |
atcaatgagaagcctcaagtgatccaagagtatgagtcagggaaagccattccaaaccagcagataattagcaagttggag |
31044713 |
T |
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