View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_high_1 (Length: 571)
Name: NF21508_high_1
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 171 - 555
Target Start/End: Original strand, 48862392 - 48862774
Alignment:
| Q |
171 |
ggaccaaaatcta-aaaaagtaaatgaattgaatataacatgaaaaacagaggcttcaactttttctaaaaagaaattgacaacaaaatgagaacttaat |
269 |
Q |
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| T |
48862392 |
ggaccaaaatctagaaaaagtaaatgaattgaatataacatgaaaaacagaggcttcaactttttctaaaaagaaattgacaacaaaatgagaacttaat |
48862491 |
T |
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| Q |
270 |
aatattaaaatgaatatagcataacatagaaatgtgagttctggctgtggctgagagttctttcctcggcacatgtggttttgttttgcagggcagtttt |
369 |
Q |
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| T |
48862492 |
aatattaaaatgaatatagcataacatagaaatgtgagttctggccgtggctcagagttctttcctcggcac--gtggttttgttttgcagggcagtttt |
48862589 |
T |
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| Q |
370 |
tctgttaagtttgccctgtgttcttgtgaccttatgagcctattgcctgcacttttcttgtgatcttgtataaatcaccataaatgcttgtttgtgaata |
469 |
Q |
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| T |
48862590 |
tctgttaagcttgccctgtgttcttgtgaccttatgagcctattgcctgcacttttcttgtgatcttg-ataaatcaccataaatgcttgtttgtgaata |
48862688 |
T |
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| Q |
470 |
aaaattaaaacataaattgcattccaaatctgtttggtttcatatatctttgtataggcagattgtagttgggtttataagagaga |
555 |
Q |
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| T |
48862689 |
aaaattaaaacataaattgcatttcaaatctgtttggtttcatatatctttgtataggcagattgtagctgggtttataacagaga |
48862774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 438 - 548
Target Start/End: Complemental strand, 48863817 - 48863707
Alignment:
| Q |
438 |
tataaatcaccataaatgcttgtttgtgaataaaaattaaaacataaattgcattccaaatctgtttggtttcatatatctttgtataggcagattgtag |
537 |
Q |
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| T |
48863817 |
tataaatcaccataaatgcttgtttgtgaataaaaatgaaaacataaattgcattccaaatctgtttggtttcatatatctttgtataggcatattgtag |
48863718 |
T |
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| Q |
538 |
ttgggtttata |
548 |
Q |
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| T |
48863717 |
ttgggtttata |
48863707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 48862222 - 48862327
Alignment:
| Q |
1 |
aaaatcttaattgattagaaagttagaatattattattttaccacttaattggctattacattaaaatgactatattagtgtagaattaactactaggta |
100 |
Q |
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| T |
48862222 |
aaaatcttaattgattagaaagttagaatattattattttactacttaattggctattacattaaaatgattatactagtgtagaattaactactaggta |
48862321 |
T |
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| Q |
101 |
gtaaac |
106 |
Q |
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|||||| |
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| T |
48862322 |
gtaaac |
48862327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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