View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_high_10 (Length: 359)
Name: NF21508_high_10
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 54913081 - 54912852
Alignment:
| Q |
16 |
caaaaggaggcaataagatcgttgctacgttgtggaaacacccttttgcaaggtttactgtattgtactctcatggtaatgctgctgatttgggtcagat |
115 |
Q |
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| T |
54913081 |
caaaaggaggcaataagatcgttgctacgttgtggaaacacccttttgcaaggtttactatattgtactctcatggtaatgctgctgatttgggtcagat |
54912982 |
T |
|
| Q |
116 |
gcgtgacctcttcattgagcttagagctcatcttcgtgtcaatatcatgaggtttcttttcttaat-ccttatatacaattttgcatgcttttattaata |
214 |
Q |
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| T |
54912981 |
gcgtgacctcttcattgagcttagagctcatcttcgtgtcaatatcatgaggtttcttttcttaatcccttatatacaattttgcatgcttttattaata |
54912882 |
T |
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| Q |
215 |
caacagtttttgtctgttaattaataatta |
244 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
54912881 |
caacagtttttgtctgttaattaataatta |
54912852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 11464742 - 11464684
Alignment:
| Q |
81 |
tactctcatggtaatgctgctgatttgggtcagatgcgtgacctcttcattgagcttag |
139 |
Q |
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| T |
11464742 |
tactctcatggcaacgctgctgatctgggtcagatgtatgagcttttcattgagcttag |
11464684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 7338093 - 7338061
Alignment:
| Q |
84 |
tctcatggtaatgctgctgatttgggtcagatg |
116 |
Q |
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| T |
7338093 |
tctcatggaaatgctgctgatttgggtcagatg |
7338061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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