View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_high_12 (Length: 352)
Name: NF21508_high_12
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 32 - 335
Target Start/End: Complemental strand, 19604786 - 19604472
Alignment:
| Q |
32 |
ctttcttgtaacggagttaaacagaaaatgatcaagacgtgcaagattttgagacttaaaacctaatatgacnnnnnnnnnn-----ctttaaaactaat |
126 |
Q |
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| T |
19604786 |
ctttcttctaacgtagttaaacagaaaatgatcaagacgtgcaagattttgagacttaaaacctaatatgacaaaaaaaaaaaaaaactttaaaactaat |
19604687 |
T |
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| Q |
127 |
----ctgaaaaatagatcaaatattgtaacttaagtatagtgatgttgcaaaatagtagctattcattggttatcaactaattcacacatttagtacata |
222 |
Q |
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| T |
19604686 |
taatctgaaaaatagatcaaatattgtaacttaagtatagtgatgttgcaaaatagtagctattcattggttatgagctaattcacacatttagtacata |
19604587 |
T |
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| Q |
223 |
gatatta-tttatggaaatgctcgttggtacaagacgaaaatacaccaaatctgatttgttgctttttcacacgtactccgttttgtttccactac--ta |
319 |
Q |
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| T |
19604586 |
gatattacttaatggaaatgctcggtggtacaagacgaaaatacaccaaatctaatttg-tgttttttcacacgtactccgttttgtttccactactata |
19604488 |
T |
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| Q |
320 |
aattcaagaccttgct |
335 |
Q |
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| T |
19604487 |
aattcaagaccttgct |
19604472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 193 - 335
Target Start/End: Complemental strand, 19626867 - 19626724
Alignment:
| Q |
193 |
ttatcaactaattcacacatttagtacatagatattatttatggaaatgctcgttggtacaagacgaaaatacaccaaatctgatttgttgctttttcac |
292 |
Q |
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| T |
19626867 |
ttatcaactaattcacatatttagtacatagatattatttatggaaatgctcggtggtacaagacgaaaatacaccaaatctgatttctt-ctttttcac |
19626769 |
T |
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| Q |
293 |
acgtactccgttttgtttccactac--taaattcaagaccttgct |
335 |
Q |
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| T |
19626768 |
acgtactccgttttgtttccactactataaattcaagaccttgct |
19626724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 19654402 - 19654306
Alignment:
| Q |
193 |
ttatcaactaattcacacatttagtacatagatattatttatggaaatgctcgttggtacaagacgaaaatacaccaaatctgatttgttgcttttt |
289 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
19654402 |
ttatcaactaattcacacatttagtatatagatattatttatggaaatgctcggttgtacaagatgaaaatacaccaaatctgatttgtttcttttt |
19654306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 19618098 - 19618015
Alignment:
| Q |
139 |
tcaaatattgtaacttaagtatagtgatgttgcaaaatagtagctattcattggttatcaactaattcacacatttagtacata |
222 |
Q |
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| T |
19618098 |
tcaaatattgtaactaaagtatagtgatgttgtaaaatagtaacacttcattgggtatcaactaatttacacatttagtacata |
19618015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 19582137 - 19582066
Alignment:
| Q |
141 |
aaatattgtaacttaagtatagtgatgttgcaaaatagtagctattcattggttatcaactaattcacacat |
212 |
Q |
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| T |
19582137 |
aaatattgtaactaaaatgtagtgatgttgcaaaataataactcttcattggttatcaactgatttacacat |
19582066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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