View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_high_19 (Length: 250)
Name: NF21508_high_19
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_high_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 37 - 250
Target Start/End: Complemental strand, 29354762 - 29354550
Alignment:
| Q |
37 |
gaaatgaatgaatctcattctcatgagtattcatcnnnnnnnnnntcttgaatcagtatttagaaaggcttcttagttcttgagatacttgaaatctaat |
136 |
Q |
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| T |
29354762 |
gaaatgaatgaatctcattctcatgagtattcat-aaaaaaaatctcttgaatcagtatttagaaaggcttcttagttcttgagatacttgaaatctaat |
29354664 |
T |
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| Q |
137 |
gaattatcaacacattcagctttgcttctataaccattcaacaatttcaacaactcagtagtattctcctttgttttctcctcacacccaacttgcaaca |
236 |
Q |
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| T |
29354663 |
gaattatcaacacattcagctttgcttctataaccattcaacaatttcaacaactcagtagtattctcctttgttttctcctcacacccaacttgcaaca |
29354564 |
T |
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| Q |
237 |
taaccaaaagtttc |
250 |
Q |
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|||||||||||||| |
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| T |
29354563 |
taaccaaaagtttc |
29354550 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 33090199 - 33090105
Alignment:
| Q |
142 |
atcaacacattcagctttgcttctataaccattcaacaatttcaacaactcagtagtattctcctttgttttctcctcacacccaacttgcaaca |
236 |
Q |
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||||||||| || ||||||||| ||||||| ||||||||||||||||| ||||||| |||||||| || |||| |||| || |||||||||| |
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| T |
33090199 |
atcaacacactctgctttgcttttataaccgttcaacaatttcaacaattcagtagctttctccttggtactctcagcacaacctacttgcaaca |
33090105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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