View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21508_high_2 (Length: 526)

Name: NF21508_high_2
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21508_high_2
NF21508_high_2
[»] chr1 (4 HSPs)
chr1 (18-216)||(34455404-34455602)
chr1 (275-526)||(34455767-34456021)
chr1 (287-405)||(32268530-32268648)
chr1 (235-278)||(34455618-34455661)
[»] chr7 (2 HSPs)
chr7 (287-458)||(29020175-29020346)
chr7 (438-485)||(1467830-1467877)
[»] chr5 (2 HSPs)
chr5 (389-457)||(13002197-13002265)
chr5 (389-457)||(13076855-13076923)
[»] chr4 (3 HSPs)
chr4 (22-169)||(56516631-56516778)
chr4 (445-487)||(8717708-8717750)
chr4 (287-339)||(24808365-24808417)
[»] chr8 (1 HSPs)
chr8 (441-487)||(11222612-11222658)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 34455404 - 34455602
Alignment:
Q  18 aaaatggccatgattcattgcttggatctaccactgctatgattaaagaacttgatgaatccggccaacattttctgatgaagaaaataatgacaaactt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34455404 aaaatggccatgattcattgcttggatctaccactgctatgattaaagaacttgatgaatccggccaacattttctgatgaagaaaataatgacaaactt 34455503  T
Q  118 gaaaacaataataacgatggactaattgaaatgccgtaaattgatgaatcatctaaagatagcaagttccaagtaggacacgagatttggaaaggaaag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34455504 gaaaacaataataacgatggactaattgaaatgccgtaaattgatgaatcatctaaagatagcaagttccaagtaggacacgagatttggaaaggaaag 34455602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 275 - 526
Target Start/End: Complemental strand, 34456021 - 34455767
Alignment:
Q  275 attgtattgaatcacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtatcaagatttc 374  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  34456021 attgtattgaaacatagagaccacacttagtttcgtacattcttaaattcacagaaattctaaattaaggtttgtaaaattggtttagtatcaagatttc 34455922  T
Q  375 aa-gtaagttcagacaagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgattgaatacttcctatgct 473  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||    
T  34455921 aaagtaagttcagacaagttagagaaagttgtgttggcatcaaacttaaataacttctcatccaatggttcctcttaatcgattgtataattcgtatgct 34455822  T
Q  474 tcaaatataacttcgtatatcctttgcg--tatgtctccatctttggttaacgac 526  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  34455821 tcaaatataacttcgtatatcctttacgtatatgtctccatctttggttaacgac 34455767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 287 - 405
Target Start/End: Complemental strand, 32268648 - 32268530
Alignment:
Q  287 cacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtatcaagatttcaagtaagttcag 386  Q
    |||| ||||| | ||||||||||| | ||||||||||||  | ||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| ||    
T  32268648 cacaaagaccgcgcttagtttcgatcgttcttaaattcacaggaattctaaattaaggtttgtaaaattggtttggtggcaggattgcaattaagttaag 32268549  T
Q  387 acaagttagagaaagttgt 405  Q
    |||||||| | ||||||||    
T  32268548 acaagttatataaagttgt 32268530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 34455618 - 34455661
Alignment:
Q  235 aggaaggtccaagaataagacaacgaatccacatttcaacattg 278  Q
    ||||||  ||||||||||||||| ||||||||||||||||||||    
T  34455618 aggaagaaccaagaataagacaatgaatccacatttcaacattg 34455661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 287 - 458
Target Start/End: Original strand, 29020175 - 29020346
Alignment:
Q  287 cacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtatcaagatttcaagtaagttcag 386  Q
    |||| ||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||| ||| || |||| |||| ||||| ||    
T  29020175 cacatagaccacgcttagtttcaatcattcttaaattcactgaaattctaaattaaggtttgtaaaattgttttggtagcaggattgcaagcaagttaag 29020274  T
Q  387 acaagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgattg 458  Q
    |||||||||||||||||||||||| || ||||||| |||| ||| |||||||||||||||||||||||||||    
T  29020275 acaagttagagaaagttgtgttgggattagacttagataatttcacatccaatggttcctcttaatcgattg 29020346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 485
Target Start/End: Complemental strand, 1467877 - 1467830
Alignment:
Q  438 atggttcctcttaatcgattgaatacttcctatgcttcaaatataact 485  Q
    ||||||||||||||||||||| ||||||  ||||| ||||||||||||    
T  1467877 atggttcctcttaatcgattgtatactttttatgcctcaaatataact 1467830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 13002197 - 13002265
Alignment:
Q  389 aagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgatt 457  Q
    ||||| |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||    
T  13002197 aagtttgagaaagttgtgttggaattagacttagataacttctcatccaatggttcctcttaatcgatt 13002265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 13076855 - 13076923
Alignment:
Q  389 aagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgatt 457  Q
    ||||| |||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||    
T  13076855 aagtttgagaaagttgtgttggaattagacttagataacttctcatctaatggttcctcttaatcgatt 13076923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 56516631 - 56516778
Alignment:
Q  22 tggccatgattcattgcttggatctaccactgctatgattaaagaacttgatgaatccg-gccaacattttctgatgaagaaaataatgacaaacttgaa 120  Q
    ||||||||||||||| | || | ||||  ||||||||| ||| ||||||| |||||| | | | ||||||||| | |||||||| ||||| || ||||||    
T  56516631 tggccatgattcattacctgaacctacttctgctatgagtaa-gaacttggtgaatctgtgtctacattttctcacgaagaaaacaatgagaatcttgaa 56516729  T
Q  121 aacaataataacgatggactaattgaaatgccgtaaattgatgaatcat 169  Q
    ||  ||| ||| |||| |||||||||||||||  ||| |||||| ||||    
T  56516730 aatgatagtaatgatgaactaattgaaatgccacaaaatgatgagtcat 56516778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 487
Target Start/End: Original strand, 8717708 - 8717750
Alignment:
Q  445 ctcttaatcgattgaatacttcctatgcttcaaatataacttc 487  Q
    |||||||||||||| ||||||  ||||||||||||||||||||    
T  8717708 ctcttaatcgattgtatactttttatgcttcaaatataacttc 8717750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 24808365 - 24808417
Alignment:
Q  287 cacagagaccacacttagtttcgaacattcttaaattcaatgaaattctaaat 339  Q
    ||||||||||||| ||||||| || |||||||||||||   ||||||||||||    
T  24808365 cacagagaccacatttagtttagaccattcttaaattcgcagaaattctaaat 24808417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 11222612 - 11222658
Alignment:
Q  441 gttcctcttaatcgattgaatacttcctatgcttcaaatataacttc 487  Q
    |||||||||||||||||| |||||   ||||||||||||||||||||    
T  11222612 gttcctcttaatcgattgtatactatttatgcttcaaatataacttc 11222658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University