View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21508_high_20 (Length: 248)
Name: NF21508_high_20
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_high_20 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 47904731 - 47904866
Alignment:
| Q |
4 |
attctgtttggaatcttatcgttttctggtagaatccgttttggatctggattgtggggtgaataggataaatatccttgtcattctcttctatcttctc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47904731 |
attctgtttggaatcttatcgttttctggtagaatccgttttggatccggattgtagggtgaataggataaatatccttgtcattctcttctatcttctc |
47904830 |
T |
|
| Q |
104 |
ggattatcttttgcatcctctaattggtttttaact |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
47904831 |
agattatcttttgcatcctctaattggtttttaact |
47904866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 47904887 - 47904943
Alignment:
| Q |
176 |
cagacaaaacctacataattcaacccccttgtgtttttctcacctttaacatgttat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47904887 |
cagacaaaacctacataattcaacccccttgtgtttttcttacctttaacatgttat |
47904943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 18821355 - 18821389
Alignment:
| Q |
187 |
tacataattcaacccccttgtgtttttctcacctt |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
18821355 |
tacacaattcaacccccttgtgtttttctcacctt |
18821389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 260544 - 260596
Alignment:
| Q |
87 |
ttctcttctatcttctcggattatcttttgcatcctctaattggtttttaact |
139 |
Q |
| |
|
||||||||| |||||| | |||||||||||||||||||| || ||||||||| |
|
|
| T |
260544 |
ttctcttcttccttctccggttatcttttgcatcctctaactgatttttaact |
260596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University