View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21508_high_21 (Length: 246)
Name: NF21508_high_21
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 44014657 - 44014871
Alignment:
| Q |
19 |
ctttagagatcagaatttgatccttcatatctccatatcgtctccgcatacctttctttgtgagttgaggcagtctcaagaaaggccttaaaaccattag |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44014657 |
ctttagagatcataatttgatccttcatatctccatatcgtctccgcatacatttctttgtgagttgaggcagtctcaagaaaggccttaaaaccattag |
44014756 |
T |
|
| Q |
119 |
cttcaagttgatgatcatatgcttcttcgacaaaaagttccctgacaagacaaagttagacgtcaattgcatcgttgactcaactaaggcgcgatagagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44014757 |
cttcaagttgatgatcatatgcttcttcgacaaaaagttccctgacgagacaaagttagacgtcaattgcatcgttgactcaactaaggcgcgatagagt |
44014856 |
T |
|
| Q |
219 |
tttcctagtacccct |
233 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44014857 |
tttcctagtacccct |
44014871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 44015980 - 44016061
Alignment:
| Q |
64 |
gcatacctttctttgtgagttgaggcagtctcaagaaaggccttaaaaccattagcttcaagttgatgatcatatgcttctt |
145 |
Q |
| |
|
|||||| | ||| ||||| || ||||||||||||||||| ||| |||||||| | ||||||| || |||||||||||||||| |
|
|
| T |
44015980 |
gcatacatatctctgtgacttaaggcagtctcaagaaagacctcaaaaccatcaacttcaagctggtgatcatatgcttctt |
44016061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University