View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_high_25 (Length: 228)
Name: NF21508_high_25
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 13651532 - 13651344
Alignment:
| Q |
17 |
tttaggaatgttatgtgaagattttgaattaaaagaagttcagctagcttgagcattgtgtttacatggccttgtgctggacatgggaagattaacacat |
116 |
Q |
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| T |
13651532 |
tttaggaatgttatgtgaagattttgaattaaaagaagttcagctagcttgagcattgtgtttacatggccttgtgctggacatgggaagattaacacat |
13651433 |
T |
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| Q |
117 |
gcggtgtttccatttttctacaatctcaattttgtgatctataggataagataagatgctatttggtagtagcattttatagtgtttgt |
205 |
Q |
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| T |
13651432 |
gcggtgtttccatttttcaacaatctcaattttgtgatctataggataagataagatgctatttggtagtagctttttatagtgtttgt |
13651344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 13646433 - 13646354
Alignment:
| Q |
38 |
ttttgaattaaaagaagttcagctagcttgagcattgtgtttacatggccttgtgctggacatgggaagattaacacatg |
117 |
Q |
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| T |
13646433 |
ttttgaattgcaagaagttcagctagctttagcattgaatttacatggccttgtgctggacatgggaagattagcacatg |
13646354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 13656759 - 13656680
Alignment:
| Q |
38 |
ttttgaattaaaagaagttcagctagcttgagcattgtgtttacatggccttgtgctggacatgggaagattaacacatg |
117 |
Q |
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||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
13656759 |
ttttgaattgcaagaagttcagctagctttagcattggatttacatggccttgtgctggacatgggaagattagcacatg |
13656680 |
T |
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