View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_high_27 (Length: 218)
Name: NF21508_high_27
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 7840179 - 7840336
Alignment:
| Q |
21 |
gtcaataatctaactgatatgcctagtgatacatttgctgtcagaaatcagaatcttgtatttatccatcggtgatatcctttgctaaaacttgagacat |
120 |
Q |
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| T |
7840179 |
gtcaataatctaactgatatgcctcgtgatacatttgctgtcagaaatcagaatcttgtatttatccatcggtaatatcctttgctaaaacttgag---- |
7840274 |
T |
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| Q |
121 |
cacatcacgctatactctatgttttatgtatttgaaccaaatacatcaattttatttaactaa |
183 |
Q |
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| T |
7840275 |
-acatcacgctatactctctgttttatgtatctgaaccaaatacatcaattttatttgactaa |
7840336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 7846163 - 7846322
Alignment:
| Q |
21 |
gtcaataatctaactgatatgcctagtgatacatttgctgtcagaaatcagaatcttgtatttatccatcggtgatatcctttgctaaaacttgagacat |
120 |
Q |
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| T |
7846163 |
gtcaataatctaactgatatgcctcgtgatacatttgctgtcagaaatcagaatcttgtatttatccattggtgatatcctttgctaaaacctgaga--- |
7846259 |
T |
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| Q |
121 |
cacatcacgctatactctatgttttatgtatttgaaccaaatacatcaattttatttaactaa |
183 |
Q |
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| T |
7846260 |
gacttcacgctatactctctattttatgtatttgaactaaatacatcaattttatttgactaa |
7846322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 3646675 - 3646721
Alignment:
| Q |
152 |
ttgaaccaaatacatcaattttatttaactaattttttcttataata |
198 |
Q |
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| T |
3646675 |
ttgaaccaaatacatcaattttatctgactaattttttcttataata |
3646721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 34648734 - 34648785
Alignment:
| Q |
144 |
ttatgtatttgaaccaaatacatcaattttatttaactaattttttcttata |
195 |
Q |
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| T |
34648734 |
ttatgaatttgaactaaatacatcaattttatttgactcactttttcttata |
34648785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 23575640 - 23575688
Alignment:
| Q |
150 |
atttgaaccaaatacatcaattttatttaactaattttttcttataata |
198 |
Q |
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| T |
23575640 |
atttgaaccaaatacatcaactttctttgacatattttttcttataata |
23575688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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