View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21508_low_13 (Length: 320)
Name: NF21508_low_13
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_low_13 |
 | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 3897145 - 3896857
Alignment:
| Q |
17 |
ccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttcctttaatttgtgatgaatgtttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3897145 |
ccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttccattaatttgtgatgaatgtttt |
3897046 |
T |
|
| Q |
117 |
ctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaataatattgcatgtaattatatgtgtcggtgaatgaacaaaggcctattctta |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3897045 |
ctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaataatattgcatgtaattatatgtgtcggtgaatgaacaaagacctattctta |
3896946 |
T |
|
| Q |
217 |
tcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttgataggctttag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896945 |
tcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttgataggctttag |
3896857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 4801 - 4511
Alignment:
| Q |
17 |
ccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttcctttaatttgtgatgaatgtttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4801 |
ccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttccattaatttgtgatgaatgtttt |
4702 |
T |
|
| Q |
117 |
ctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaataatatt--gcatgtaattatatgtgtcggtgaatgaacaaaggcctattct |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4701 |
ctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaataatattaagcatgtaattatatgtgtaggtgaatgaacaaaggcctattct |
4602 |
T |
|
| Q |
215 |
tatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttgataggctttag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4601 |
tatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacttgtactgaatcaattttattttccttgttgataggctttag |
4511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 24806921 - 24806969
Alignment:
| Q |
113 |
ttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaat |
161 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
24806921 |
ttttctatcaagcacggacacgtcaacatggataaaattttgagaaaat |
24806969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University