View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_low_14 (Length: 318)
Name: NF21508_low_14
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 59 - 300
Target Start/End: Complemental strand, 9031453 - 9031212
Alignment:
| Q |
59 |
cacagagcgtgacacctgtaaatcatgacttgtttggtacgattcttactcatgaaaacgtaatctcgaaacttctcacatgaatttacatttccgatgt |
158 |
Q |
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| T |
9031453 |
cacagagcctgacacctgtaaatcatgatttgtttggtatgattcttactcatgaaaacgtaatctcgaaacttctcacatgaatttatatttccgatgt |
9031354 |
T |
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| Q |
159 |
gaagccacacgacttgcattggaatttgggttgtgctttgtcgttacgtcatttggttgggagttacggattggtgtgaagccacattgtttggataaga |
258 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
9031353 |
gaagccacacgacttgcattagaatttgggttgtgctttgtcgttacgtcatttggttgggagttacggattggtgtgaagccacgtggtttggataaga |
9031254 |
T |
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| Q |
259 |
atcagggttatgctttatagccatgtcacttgggttgaaatt |
300 |
Q |
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| T |
9031253 |
atcagggttatgctttatagccatgtcacttgggttgaaatt |
9031212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 58 - 300
Target Start/End: Complemental strand, 9013808 - 9013565
Alignment:
| Q |
58 |
gcacagagcgtgacacctgtaaatcatgacttgtttggtacgattcttactcatgaaaacgtaatctcgaaacttctcacatgaatttacatttccgatg |
157 |
Q |
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| T |
9013808 |
gcacagagtgtgacacctgtaaatcatgacttgtttgatacgattcttactcatgaaaacgtaatctcgaaacttctcacatgaatttacatttccgatg |
9013709 |
T |
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| Q |
158 |
tgaagccacacgacttgcattggaatttgggttgtgctttgtcgttacgtcatttggttgggagttacgg-attggtgtgaagccacattgtttggataa |
256 |
Q |
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| T |
9013708 |
tgaagccacgtgtcttgcattggaatttgggttgtgctttgtcgttacctcatttggtttggagttacggttttggtgtgaagccacgtggtttggatag |
9013609 |
T |
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| Q |
257 |
gaatcagggttatgctttatagccatgtcacttgggttgaaatt |
300 |
Q |
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| T |
9013608 |
gaatcagggttatgctttatagccatgtcacttgcattgaaatt |
9013565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 58 - 300
Target Start/End: Complemental strand, 8989597 - 8989355
Alignment:
| Q |
58 |
gcacagagcgtgacacctgtaaatcatgacttgtttggtacgattcttactcatgaaaacgtaatctcgaaacttctcacatgaatttacatttccgatg |
157 |
Q |
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| T |
8989597 |
gcacagagcgtgacacctgtaaatcatggcttgtttggtacgattcttactcatgaaaacataatctcgaaacttctcacattaatttacatttccgatg |
8989498 |
T |
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| Q |
158 |
tgaagccacacgacttgcattggaatttgggttgtgctttgtcgttacgtcatttggttgggagttacgg-attggtgtgaagccacattgtttggataa |
256 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| ||| ||| ||||||| | |||||||||| |
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| T |
8989497 |
tgaagccacgtgacttgcattagaatttgggttgtgctttgtcgttacgtcatttgatttggagttacggttttgatgtaaagccacgtggtttggataa |
8989398 |
T |
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| Q |
257 |
gaatcagggttatgctttatagccatgtcacttgggttgaaatt |
300 |
Q |
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| T |
8989397 |
gaatca-gcttatgctttatagccatgtcacttgggttgaaatt |
8989355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 66 - 300
Target Start/End: Complemental strand, 9022125 - 9021890
Alignment:
| Q |
66 |
cgtgacacctgtaaatcatgacttgtttggtacgattcttactcatgaaaacgtaatctcgaaacttctcacatgaatttacatttccgatgtgaagcca |
165 |
Q |
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| T |
9022125 |
cgtgacacctgtaaatcatggcttgtttggtacgattcttactcatgaaaacgtaatctcaaaacttctcacatgaatttacattttcgatgtgaaacca |
9022026 |
T |
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| Q |
166 |
cacgacttgcattggaatttgggttgtgctttgtcgttacgtcatttggttgggagttacgg-attggtgtgaagccacattgtttggataagaatcagg |
264 |
Q |
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| T |
9022025 |
cgtgacttgcattggaatttgggttgtgctttatcgttacgtcatttgatttggagttacggttttggtgtaaagccacgtggtttggataagaatcagg |
9021926 |
T |
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| Q |
265 |
gttatgctttatagccatgtcacttgggttgaaatt |
300 |
Q |
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| T |
9021925 |
gttatgctttatagccatgtcacttgcattgaaatt |
9021890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 58 - 300
Target Start/End: Complemental strand, 8997722 - 8997465
Alignment:
| Q |
58 |
gcacagagcgtgacacctgtaaatcatgacttgtttggtacgattcttactcatgaaaacgtaatctcgaaacttctcacatgaatttacatttccgatg |
157 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
8997722 |
gcacagagcgtgacacccgtaaatcatgacttgtttgatacgattcttactcatgaaaacgtaatctcgaaatttctcacatgaatttacattttcgatg |
8997623 |
T |
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| Q |
158 |
tgaagccacacgacttgc--------------attggaatttgggttgtgctttgtcgttacgtcatttggttgggagttacgg-attggtgtgaagcca |
242 |
Q |
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| T |
8997622 |
tgaagtcacatgacttgcattgaaatacttgcattggaatttggattgtgctttgtcgttatctcatttggtttggagttacggttttgatgtgaaacca |
8997523 |
T |
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| Q |
243 |
cattgtttggataagaatcagggttatgctttatagccatgtcacttgggttgaaatt |
300 |
Q |
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| T |
8997522 |
cgtggtttagataagaataaaagttatgctttatagccatgtcacttgggttgaaatt |
8997465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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