View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_low_17 (Length: 278)
Name: NF21508_low_17
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 51214538 - 51214284
Alignment:
| Q |
17 |
aattccatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctcgtatagtttctgtg |
116 |
Q |
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| T |
51214538 |
aattccatcactttctcttcggcacagaaagcagaaactgttctgatattccctactgcgtcgttcgctacttgacttgcttcctcgtatagtttctgtg |
51214439 |
T |
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| Q |
117 |
aaacatatttagagcatagaaacatcatgtcaaatgaagattagtacaaatttcatatagaaacaaaatatgtactaaataaatttagagacaaaaatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214438 |
aaacatatttagagcatagaaacatcatgtcaaatgaagattagtacaaatttcatatagaaacaaaatatgtactaaataaatttagagacaaaaatgc |
51214339 |
T |
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| Q |
217 |
attgtgacacaattgaagcacattgtgtaaggcacaaacctttgcgtctgtgctg |
271 |
Q |
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| T |
51214338 |
attgtgacgcaattgaagcacattgtgtaaggcacaaacctttgcgtctgtgctg |
51214284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 29935480 - 29935578
Alignment:
| Q |
17 |
aattccatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctcgtatagtttctgt |
115 |
Q |
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| T |
29935480 |
aattccatcaccttctcttcagcacagaaagaagaaactgttcttatacaccctaccgcatcatttgccacttgacttgcttcctcgtacaatttctgt |
29935578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 51201478 - 51201393
Alignment:
| Q |
17 |
aattccatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctc |
102 |
Q |
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| T |
51201478 |
aattccatcaccttctcttcagaacagaaagaagcaactgttcttatactccctactgcatcattcgccacttgacttgcttcctc |
51201393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 51147529 - 51147431
Alignment:
| Q |
17 |
aattccatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctcgtatagtttctgt |
115 |
Q |
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||||||||||||||||| || ||||| |||| ||||| ||||| ||| ||||||| ||||| ||||| |||||||||||||||||||| | ||||||| |
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| T |
51147529 |
aattccatcaccttctcctcagcacaaaaagaggaaacagttcttatactccctacagcatcatttgccacttgacttgcttcctcgtacaatttctgt |
51147431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 51158684 - 51158602
Alignment:
| Q |
17 |
aattccatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttc |
99 |
Q |
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| T |
51158684 |
aattccattaccttcttttcagcacaaaaagaagcaactgttcttatgctccctacagcatcatttgccacttgacttgcttc |
51158602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 49735574 - 49735760
Alignment:
| Q |
20 |
tccatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctcgtatagtttctgtgaaa |
119 |
Q |
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| T |
49735574 |
tccatcaccttctcttcagcacagaaagcggaaactgttctgatattccctactgcatcattcgctacttgacttgcttcctcatactgtttctgtcaaa |
49735673 |
T |
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| Q |
120 |
catatttagagcatagaaacatcatgtcaaatgaagattagtacaaatttcatatagaaa-caaaatatgtactaaataaatttaga |
205 |
Q |
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| T |
49735674 |
catatatagagcatagtaacatcatgtcaaatggagattagtactaattaaatatataaagcaaaatatgtactaaataaatttaga |
49735760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 36287828 - 36287746
Alignment:
| Q |
20 |
tccatcaccttctcttcggcacagaaagcagaaactgttctgatattccctactgcatcgtttgctacttgacttgcttcctc |
102 |
Q |
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||||| ||||||||||| |||||||||| || ||||||||| || || | || ||||| ||||| ||||||||||||||||| |
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| T |
36287828 |
tccataaccttctcttcagcacagaaagaagcaactgttctaatgttactcacagcatcatttgccacttgacttgcttcctc |
36287746 |
T |
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