View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_low_22 (Length: 246)
Name: NF21508_low_22
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 44014657 - 44014871
Alignment:
| Q |
19 |
ctttagagatcagaatttgatccttcatatctccatatcgtctccgcatacctttctttgtgagttgaggcagtctcaagaaaggccttaaaaccattag |
118 |
Q |
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| T |
44014657 |
ctttagagatcataatttgatccttcatatctccatatcgtctccgcatacatttctttgtgagttgaggcagtctcaagaaaggccttaaaaccattag |
44014756 |
T |
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| Q |
119 |
cttcaagttgatgatcatatgcttcttcgacaaaaagttccctgacaagacaaagttagacgtcaattgcatcgttgactcaactaaggcgcgatagagt |
218 |
Q |
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| T |
44014757 |
cttcaagttgatgatcatatgcttcttcgacaaaaagttccctgacgagacaaagttagacgtcaattgcatcgttgactcaactaaggcgcgatagagt |
44014856 |
T |
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| Q |
219 |
tttcctagtacccct |
233 |
Q |
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| T |
44014857 |
tttcctagtacccct |
44014871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 44015980 - 44016061
Alignment:
| Q |
64 |
gcatacctttctttgtgagttgaggcagtctcaagaaaggccttaaaaccattagcttcaagttgatgatcatatgcttctt |
145 |
Q |
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|||||| | ||| ||||| || ||||||||||||||||| ||| |||||||| | ||||||| || |||||||||||||||| |
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| T |
44015980 |
gcatacatatctctgtgacttaaggcagtctcaagaaagacctcaaaaccatcaacttcaagctggtgatcatatgcttctt |
44016061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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