View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21508_low_27 (Length: 227)

Name: NF21508_low_27
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21508_low_27
NF21508_low_27
[»] chr3 (29 HSPs)
chr3 (7-202)||(24926055-24926250)
chr3 (13-196)||(36709494-36709677)
chr3 (13-196)||(15481131-15481314)
chr3 (13-196)||(42674812-42674995)
chr3 (21-196)||(45684768-45684943)
chr3 (13-199)||(21739893-21740079)
chr3 (5-199)||(14863835-14864029)
chr3 (35-140)||(55367216-55367320)
chr3 (50-139)||(38774893-38774982)
chr3 (38-137)||(48569471-48569570)
chr3 (26-140)||(1231653-1231767)
chr3 (21-178)||(10868195-10868352)
chr3 (35-80)||(25024333-25024378)
chr3 (24-140)||(30166773-30166889)
chr3 (35-79)||(54439597-54439641)
chr3 (52-139)||(34830016-34830103)
chr3 (38-139)||(962593-962694)
chr3 (54-139)||(19919659-19919744)
chr3 (20-124)||(6175923-6176027)
chr3 (35-139)||(40513154-40513258)
chr3 (35-103)||(53941909-53941977)
chr3 (38-137)||(12341687-12341786)
chr3 (26-76)||(19565998-19566048)
chr3 (49-139)||(22734153-22734243)
chr3 (20-114)||(29309999-29310093)
chr3 (35-129)||(43284791-43284885)
chr3 (54-139)||(2364902-2364987)
chr3 (57-142)||(8943964-8944049)
chr3 (90-139)||(34332245-34332294)
[»] chr2 (25 HSPs)
chr2 (7-199)||(36804697-36804889)
chr2 (13-179)||(35488421-35488587)
chr2 (15-196)||(8065634-8065815)
chr2 (6-199)||(11233860-11234053)
chr2 (21-196)||(28399923-28400098)
chr2 (6-199)||(9668376-9668569)
chr2 (35-139)||(20004565-20004669)
chr2 (51-130)||(22724878-22724957)
chr2 (35-179)||(12646127-12646271)
chr2 (21-141)||(15018269-15018389)
chr2 (49-142)||(6824031-6824124)
chr2 (6-141)||(25380822-25380957)
chr2 (30-140)||(44028649-44028759)
chr2 (13-77)||(16213762-16213826)
chr2 (24-192)||(45422115-45422283)
chr2 (30-80)||(355375-355425)
chr2 (61-139)||(9409673-9409751)
chr2 (45-142)||(28253336-28253433)
chr2 (20-124)||(26894057-26894161)
chr2 (20-124)||(26899496-26899600)
chr2 (24-142)||(13550712-13550830)
chr2 (24-142)||(13551165-13551283)
chr2 (35-76)||(31071300-31071341)
chr2 (49-85)||(28598563-28598599)
chr2 (93-141)||(33583855-33583903)
[»] chr7 (25 HSPs)
chr7 (6-199)||(5327340-5327533)
chr7 (6-199)||(41340110-41340302)
chr7 (21-196)||(18671762-18671937)
chr7 (13-196)||(18767992-18768175)
chr7 (13-179)||(34457548-34457714)
chr7 (36-178)||(36227542-36227683)
chr7 (13-146)||(17856313-17856445)
chr7 (6-178)||(13553575-13553747)
chr7 (5-131)||(45993151-45993277)
chr7 (35-139)||(19544832-19544936)
chr7 (20-114)||(13440644-13440738)
chr7 (35-139)||(34104083-34104187)
chr7 (29-79)||(19735118-19735168)
chr7 (35-121)||(20918566-20918652)
chr7 (62-140)||(33820988-33821066)
chr7 (38-139)||(234868-234969)
chr7 (90-140)||(39931025-39931075)
chr7 (54-139)||(4937558-4937643)
chr7 (38-139)||(11276678-11276779)
chr7 (62-131)||(23887716-23887785)
chr7 (62-131)||(23898892-23898961)
chr7 (38-139)||(29968583-29968684)
chr7 (95-139)||(17721301-17721345)
chr7 (35-131)||(40018280-40018376)
chr7 (24-140)||(46626417-46626533)
[»] chr8 (27 HSPs)
chr8 (9-196)||(23942667-23942854)
chr8 (6-188)||(6901486-6901667)
chr8 (5-131)||(4987503-4987629)
chr8 (6-174)||(24794323-24794491)
chr8 (6-199)||(43249174-43249367)
chr8 (6-199)||(11393718-11393911)
chr8 (6-80)||(12134904-12134978)
chr8 (13-94)||(44082487-44082568)
chr8 (35-140)||(37165550-37165655)
chr8 (35-123)||(15439723-15439811)
chr8 (35-123)||(15531027-15531115)
chr8 (37-140)||(12341175-12341278)
chr8 (38-137)||(20824908-20825007)
chr8 (35-199)||(7452958-7453122)
chr8 (26-140)||(25320408-25320522)
chr8 (51-137)||(37434391-37434477)
chr8 (35-124)||(36025127-36025216)
chr8 (49-132)||(6245702-6245785)
chr8 (38-137)||(17700089-17700188)
chr8 (49-139)||(5585309-5585399)
chr8 (57-127)||(29721352-29721422)
chr8 (54-139)||(7925011-7925096)
chr8 (54-139)||(8300428-8300513)
chr8 (54-139)||(9923226-9923311)
chr8 (90-139)||(41664798-41664847)
chr8 (35-139)||(8902433-8902537)
chr8 (33-141)||(25193692-25193800)
[»] chr4 (24 HSPs)
chr4 (13-178)||(53810425-53810590)
chr4 (13-196)||(26694512-26694695)
chr4 (5-141)||(8935650-8935786)
chr4 (5-120)||(19648278-19648393)
chr4 (35-196)||(2365612-2365773)
chr4 (6-174)||(42952900-42953068)
chr4 (5-111)||(23657873-23657979)
chr4 (21-141)||(19115028-19115148)
chr4 (20-142)||(23872903-23873025)
chr4 (20-142)||(55299203-55299325)
chr4 (24-192)||(7662685-7662853)
chr4 (24-142)||(3129416-3129534)
chr4 (35-179)||(55725096-55725240)
chr4 (20-124)||(20675613-20675717)
chr4 (54-139)||(23647679-23647764)
chr4 (13-110)||(53486402-53486499)
chr4 (33-73)||(10392151-10392191)
chr4 (35-139)||(43516178-43516282)
chr4 (33-127)||(39983664-39983758)
chr4 (26-79)||(12726901-12726954)
chr4 (38-139)||(19755876-19755977)
chr4 (38-139)||(19783829-19783930)
chr4 (54-139)||(23642021-23642106)
chr4 (13-70)||(29553239-29553296)
[»] scaffold0308 (1 HSPs)
scaffold0308 (13-199)||(17729-17915)
[»] chr5 (21 HSPs)
chr5 (13-199)||(35122076-35122262)
chr5 (13-196)||(6866948-6867131)
chr5 (8-199)||(30509417-30509608)
chr5 (8-199)||(30549757-30549948)
chr5 (13-196)||(38358051-38358234)
chr5 (6-141)||(22094678-22094813)
chr5 (35-139)||(380507-380611)
chr5 (26-190)||(31864386-31864550)
chr5 (26-184)||(31864831-31864989)
chr5 (6-79)||(19512955-19513028)
chr5 (38-139)||(33170267-33170368)
chr5 (38-137)||(8299614-8299713)
chr5 (54-139)||(35983221-35983306)
chr5 (35-103)||(26262342-26262410)
chr5 (38-137)||(10780810-10780909)
chr5 (38-137)||(25856871-25856970)
chr5 (40-139)||(27165395-27165494)
chr5 (54-139)||(27116603-27116688)
chr5 (90-139)||(42928792-42928841)
chr5 (35-79)||(22437822-22437866)
chr5 (36-140)||(35637742-35637845)
[»] chr6 (22 HSPs)
chr6 (13-171)||(23065444-23065602)
chr6 (13-196)||(21549432-21549614)
chr6 (20-131)||(33805371-33805482)
chr6 (6-140)||(13086116-13086250)
chr6 (5-141)||(502960-503096)
chr6 (5-131)||(33640493-33640619)
chr6 (20-192)||(11469159-11469331)
chr6 (13-85)||(4478575-4478647)
chr6 (5-111)||(19256216-19256322)
chr6 (20-142)||(15674420-15674542)
chr6 (20-142)||(23346894-23347016)
chr6 (38-137)||(17605766-17605865)
chr6 (38-139)||(24766844-24766945)
chr6 (37-76)||(24573724-24573763)
chr6 (38-137)||(17577148-17577249)
chr6 (13-110)||(649532-649629)
chr6 (45-142)||(14372418-14372515)
chr6 (13-110)||(17078649-17078746)
chr6 (35-140)||(25350828-25350933)
chr6 (30-79)||(31292551-31292600)
chr6 (43-139)||(13938332-13938428)
chr6 (57-137)||(20882465-20882545)
[»] chr1 (20 HSPs)
chr1 (20-196)||(34853022-34853197)
chr1 (5-131)||(25504432-25504558)
chr1 (6-199)||(20796234-20796427)
chr1 (6-199)||(39430854-39431047)
chr1 (6-199)||(49264334-49264527)
chr1 (21-142)||(32352737-32352858)
chr1 (35-141)||(40562986-40563092)
chr1 (22-114)||(48072886-48072978)
chr1 (26-140)||(13112717-13112831)
chr1 (35-139)||(45795881-45795985)
chr1 (35-141)||(27393377-27393483)
chr1 (54-139)||(6051228-6051313)
chr1 (35-132)||(13867270-13867367)
chr1 (35-76)||(43943971-43944012)
chr1 (35-79)||(33142703-33142747)
chr1 (45-123)||(20987771-20987849)
chr1 (13-110)||(10710656-10710753)
chr1 (35-80)||(52692077-52692122)
chr1 (155-199)||(33142584-33142628)
chr1 (35-111)||(38070438-38070514)
[»] scaffold0112 (1 HSPs)
scaffold0112 (23-201)||(15029-15197)
[»] scaffold0131 (1 HSPs)
scaffold0131 (24-199)||(3926-4101)
[»] scaffold0002 (2 HSPs)
scaffold0002 (24-199)||(327505-327680)
scaffold0002 (24-199)||(312051-312226)
[»] scaffold0029 (1 HSPs)
scaffold0029 (24-199)||(134224-134399)
[»] scaffold1350 (1 HSPs)
scaffold1350 (38-179)||(153-294)
[»] scaffold0418 (1 HSPs)
scaffold0418 (24-192)||(8199-8367)
[»] scaffold0179 (2 HSPs)
scaffold0179 (9-84)||(8112-8187)
scaffold0179 (9-84)||(13046-13121)
[»] scaffold0048 (1 HSPs)
scaffold0048 (60-131)||(63737-63808)
[»] scaffold0036 (1 HSPs)
scaffold0036 (62-140)||(3008-3086)
[»] scaffold0113 (1 HSPs)
scaffold0113 (35-80)||(36110-36155)
[»] scaffold0034 (1 HSPs)
scaffold0034 (54-139)||(105273-105358)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 24926250 - 24926055
Alignment:
Q  7 cctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactcttt 106  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24926250 cctcgtcataacgggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactcttt 24926151  T
Q  107 caacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccctcg 202  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24926150 caacttcctaaccctcaaccctccatgctcctttttacaagacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccctcg 24926055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 36709494 - 36709677
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| ||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||  ||||||| |||||||||||||| ||||||||    
T  36709494 cataacgggcgactaaaacatgataccacaacccttctctgtcaactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaactt 36709593  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    |||||||||||| |||||||||||||||||| |||||| | |||||||||| ||||||||||||||| ||   |||||||||||    
T  36709594 cctaacccccaaacctccatgctcctttttagaacacaaggtattccaacctatccaagtaatttttctacaatcctcactccc 36709677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 15481314 - 15481131
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| |||||||| |||| |||||||||| |||||||| || |||||||||||||||||||||||  ||| ||| |||||||||||||| ||||||||    
T  15481314 cataacgggcgactagaacatgataccacaacccttctctgtcaactaacatcctccaacaccatttacctaataaagcaatattaaactccttcaactt 15481215  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    |||||||||||| |||||||||||||||||| |||||| | |||||||||| ||||||||||||||| ||   |||||||||||    
T  15481214 cctaacccccaaacctccatgctcctttttagaacacaaggtattccaacctatccaagtaatttttctacaatcctcactccc 15481131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 42674995 - 42674812
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| ||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||||||  |||||||  ||||||||||||| |||||  |    
T  42674995 cataacgggcgactaaaacctgataccacaacccttctctatcaactaacatcctccaacaccatttacctagtaaaacaatattaaactccttcaatct 42674896  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    ||| ||| |||| |||||||||||||||||| ||||||   ||| |||||| ||||||||||||||| ||   |||||||||||    
T  42674895 cctcacctccaaacctccatgctcctttttagaacacaaagtatcccaacctatccaagtaatttttctacaatcctcactccc 42674812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 45684768 - 45684943
Alignment:
Q  21 gcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccc 120  Q
    |||||||||||  |||||||||  ||||||||||| |||||||||||||||||||||||  ||||||| |||||||||||||| |||||   ||||||||    
T  45684768 gcgactaaaacctgataccacagcccttctctatcgactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatcgcctaaccc 45684867  T
Q  121 ccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    |||| ||||||  |||||||||  ||||||    || |||||| ||||||||||||||| ||   |||||||||||    
T  45684868 ccaaacctccaaactccttttttgaacacaaagaatcccaacctatccaagtaatttttttacaatcctcactccc 45684943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 21740079 - 21739893
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| |||||||| ||||| |||||| |||||| ||||||| || ||||||||||||||||||||  |||  || |||| |||||||||  ||||  |    
T  21740079 cataacgggcgactagaacacaataccataaacctactctatctaccaacatcctccaacaccatttacctaacaaagcaaaattaaactccctcaatct 21739980  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||| |||||||||||||||  |||||||  | ||||||   |||||||||| ||||||||||||||   | ||||||||||||||||    
T  21739979 ccttacccccaaccctccagactcctttgaagaacacaaagtattccaacctatccaagtaattttccgacggtcctcactcccccc 21739893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 14864029 - 14863835
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    ||||||| ||||||||||||| | ||||| |||||| |||||| || |||| || ||||||||||||||||||||  |||  || |||| |||||||||     
T  14864029 cacctcgccataacaggcgacaagaacactataccataaacctactttatcgaccaacatcctccaacaccatttacctaacaatgcaaaattaaactcc 14863930  T
Q  105 ttcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
     ||||  ||||||||||||||||||||  ||||||   | |||| |   |||||||||| ||||||||||||||   | ||||||||| ||||||    
T  14863929 ctcaatctcctaacccccaaccctccagactccttagaagaacataaagtattccaacctatccaagtaattttccgacggtcctcacccccccc 14863835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 55367216 - 55367320
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    ||||||||| ||  ||||||| |||||||||||||||||||||||| |||  || |||| |||||| || ||||||||||| ||||||||||| |||| |    
T  55367216 ataccacaacccacctctatcaactaacatcctccaacaccattttcctaacaacgcaagattaaattccttcaacttcctcacccccaaccc-ccatac 55367314  T
Q  135 tccttt 140  Q
    ||||||    
T  55367315 tccttt 55367320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 38774893 - 38774982
Alignment:
Q  50 tctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||||| |||||||||||||| |||||||||||||  || ||| | ||||||||  ||| | ||||||||||||| ||||||||||||||    
T  38774893 tctatcaactaacatcctccagcaccatttttctaacaaagcagtgttaaactccctcatcgtcctaacccccaaacctccatgctcctt 38774982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 48569570 - 48569471
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||| || |||||||| ||||||| || |||||||||||| ||||| || ||||| ||||||||| ||||  ||||||| |||| |||||||| ||||    
T  48569570 ccacaacccatctctatcaactaacaaccgccaacaccatttctctagcaaagcaatgttaaactctctcaatctcctaacacccagccctccatactcc 48569471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 1231767 - 1231653
Alignment:
Q  26 taaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaac 125  Q
    ||||||||| |||||||| || ||| | ||||| ||||||||||||||||||||  | |  || | || |||||||||| | ||| ||||||||||||||    
T  1231767 taaaacacggtaccacaacccctctttttccaccaacatcctccaacaccatttccccaacaaagaaaaattaaactctcttaacctcctaacccccaac 1231668  T
Q  126 cctccatgctccttt 140  Q
    || |||| |||||||    
T  1231667 cccccatcctccttt 1231653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 10868195 - 10868352
Alignment:
Q  21 gcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccc 120  Q
    ||||||| ||||| ||| || |||||| ||||||| || ||||||||||||||||||||  |||  || |||| |||||||||  ||||  |||| ||||    
T  10868195 gcgactagaacactatatcagaaacctactctatctaccaacatcctccaacaccatttacctaacaaagcaaaattaaactccctcaatctccttaccc 10868294  T
Q  121 ccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttt 178  Q
    | |||||||||  |||||||  | ||| |    |||||||||| ||||||||||||||    
T  10868295 ctaaccctccagactcctttgaagaactccaagtattccaacctatccaagtaatttt 10868352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 25024378 - 25024333
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttt 80  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||    
T  25024378 ataccaaaaaccatctctatccactaacatcctccaacaccatttt 25024333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 30166889 - 30166773
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    ||||| |||| ||||||||||||  |||| || || ||||||| ||||||||||||  |||  || ||| ||||||| || ||||||| ||| |||||||    
T  30166889 actaagacactataccacaaaccacctctgtcaaccaacatccgccaacaccatttacctaacaaagcactattaaattccttcaactgcctcaccccca 30166790  T
Q  124 accctccatgctccttt 140  Q
    | ||||||| |||||||    
T  30166789 aacctccattctccttt 30166773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 54439641 - 54439597
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccattt 79  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  54439641 ataccacaaaccttctctatccactaatatcctccaacatcattt 54439597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 34830016 - 34830103
Alignment:
Q  52 tatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    ||||||| ||||||| ||||||||||||  |||  || ||| ||||||| || | ||||||||| |||||||||||||||| ||||||    
T  34830016 tatccaccaacatccgccaacaccatttacctaacaaagcactattaaattcatgcaacttcctcacccccaaccctccatactcctt 34830103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 962694 - 962593
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||| || ||||| || ||||||| |||||||||||||||| |||  || ||||||||||||||  ||||  ||||||| |||| |||||| | ||||    
T  962694 ccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccctcaaactcctaacacccatccctccgtactcc 962595  T
Q  138 tt 139  Q
    ||    
T  962594 tt 962593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 19919744 - 19919659
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| |||||||||||||||  | |  |||||||| ||||||||  ||||| || |||||||||||||||||| ||||||    
T  19919744 tccaataacaacctccaacaccatttgcccaacaaggcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 19919659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 6176027 - 6175923
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    |||||||||||| | ||||||||||||  |||| ||||| | ||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||  |||    
T  6176027 ggcgactaaaaccctataccacaaaccacctctgtccaccagcatccgccaacaccattttcctaacaaagctaaattaaactccttcaatttccgcacc 6175928  T
Q  120 cccaa 124  Q
    |||||    
T  6175927 cccaa 6175923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 40513258 - 40513154
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| |||||  |||||||||| ||||||| ||||||||||||  |||  || ||| ||||||| || | ||||||||| |||||||| || |||| |    
T  40513258 ataccataaaccacctctatccaccaacatccgccaacaccatttacctaacaaagcactattaaaatcctgcaacttcctcacccccaaacccccatac 40513159  T
Q  135 tcctt 139  Q
    |||||    
T  40513158 tcctt 40513154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 53941909 - 53941977
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactc 103  Q
    |||||| || || ||||||||||| ||||||||||||||||||||| ||| ||| |||  |||||||||    
T  53941909 ataccagaacccctctctatccaccaacatcctccaacaccattttcctaataaagcataattaaactc 53941977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 12341786 - 12341687
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||||||| | ||||| ||||||| || ||||||||||||  | |  || ||||| ||||||||| ||||| |||| || ||||||||||||| ||||    
T  12341786 ccacaaacctcccctatcaactaacagccgccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctcacacccaaccctccatactcc 12341687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 19565998 - 19566048
Alignment:
Q  26 taaaacacgataccacaaaccttctctatccactaacatcctccaacacca 76  Q
    |||||| |||||||| || || ||||||||||||||||||||||| |||||    
T  19565998 taaaactcgataccataatccctctctatccactaacatcctccaccacca 19566048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 22734243 - 22734153
Alignment:
Q  49 ctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    ||||||| ||||||| |  ||||||||||||  ||||||| ||||||||||| ||  | |||||||| ||| |||| ||||||| ||||||    
T  22734243 ctctatcgactaacaactaccaacaccatttacctagtaaagcaatattaaattcccttaacttcctcacctccaatcctccatactcctt 22734153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 29309999 - 29310093
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcc 114  Q
    |||||||||||| | ||||||||||||  || | ||||| ||||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||    
T  29309999 ggcgactaaaaccctataccacaaaccacctttgtccaccaacatccgccaacaccattttcctaacaatgctaaattaaactccttcaatttcc 29310093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 43284885 - 43284791
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctc 129  Q
    ||||||||| || ||| |||||| |||||||||| ||||||||||  |||  |  ||||||||||||||| ||||  ||||||| ||||| ||||    
T  43284885 ataccacaatccctctttatccattaacatcctctaacaccatttccctaaaatagcaatattaaactctctcaatctcctaactcccaaacctc 43284791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 2364902 - 2364987
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| |||||||||||||||  | |  || ||||| ||||||||  ||||| || |||||||||||||||||| ||||||    
T  2364902 tccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 2364987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 8943964 - 8944049
Alignment:
Q  57 actaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctccttttt 142  Q
    |||| |||||||||||||||||| ||||  |  |||| ||||||||| || ||||  || ||||| |||||||||| |||||||||    
T  8943964 actagcatcctccaacaccatttatctaagatagcaaaattaaactccttaaactgtctcaccccaaaccctccatactccttttt 8944049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 34332294 - 34332245
Alignment:
Q  90 gcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    ||||| ||||||||| ||||| || |||||||||||||||||| ||||||    
T  34332294 gcaatgttaaactctctcaacctcgtaacccccaaccctccatactcctt 34332245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 36804697 - 36804889
Alignment:
Q  7 cctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactcttt 106  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  36804697 cctcgccataacgggcgactaaaacacgataccacaaaccttctctctctactaacatcctccaacaccattttcctagtaaagcaatattaaactcttt 36804796  T
Q  107 caacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    |||||||||||||||||||| |||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||    
T  36804797 caacttcctaacccccaaccatccatgctcccttttacaacacatggtatcccaaccaatccaagtaatttttctatggtcctcactcccccc 36804889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 35488421 - 35488587
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| ||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||  ||||||| |||| ||||||||| ||||||||    
T  35488421 cataacgggcgactaaaacatgataccacaacccttctctatcaactaacaacctccaacaccatttacctagtaaagcaacattaaactccttcaactt 35488520  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaattttt 179  Q
    |||||||||||| |||||||||||| ||||| ||||||   |||||||||| ||||||| |||||||    
T  35488521 cctaacccccaaacctccatgctccattttagaacacacagtattccaacctatccaagaaattttt 35488587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 8065815 - 8065634
Alignment:
Q  15 taacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcc 114  Q
    |||| ||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||| |||||  ||||||| |||| ||||||||  ||||||||||    
T  8065815 taacgggcgactaaaacatgataccacaacccttctctatcaactaacaacctccaacatcatttacctagtaaagcaacattaaacttcttcaacttcc 8065716  T
Q  115 taacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    | |||||||| |||||||||||||||||| |||||| | |||||||||| ||||||  ||||||| ||   |||||||||||    
T  8065715 tgacccccaaacctccatgctcctttttagaacacaaggtattccaacctatccaataaatttttctaaaatcctcactccc 8065634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 11234053 - 11233860
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||||| ||||| ||||||||||||| ||||||| || |||||| |||||||||||||  |||  || |||| |||||||||      
T  11234053 acctcgccataacgggcgactagaacactataccacaaacctactctatctaccaacatcgtccaacaccatttacctaacaaagcaaaattaaactccc 11233954  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||||||||||||||||||||||||||  |||||||  | ||||||   |||||||||| ||||||||||||||   | ||||||||||||||||    
T  11233953 tcaacttcctaacccccaaccctccagactcctttgaagaacacaaagtattccaacctatccaagtaattttccgacggtcctcactcccccc 11233860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 28400098 - 28399923
Alignment:
Q  21 gcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccc 120  Q
    |||||||||||  |||||||||  ||||||||||| |||||||||||||||||||||||  ||||||| |||||||||||||| |||||   ||||||||    
T  28400098 gcgactaaaacctgataccacatcccttctctatcgactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatcgcctaaccc 28399999  T
Q  121 ccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    |||| ||||||  |||||||||  ||||||    || |||||| ||||||||||||||| ||   |||||||||||    
T  28399998 ccaaacctccaaactccttttttgaacacaaagaatcccaacctatccaagtaatttttctacaatcctcactccc 28399923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 9668569 - 9668376
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||||| ||||| ||||||||| ||| ||||||| || ||||||||||||||| ||||  |||  || ||||  ||||||||      
T  9668569 acctcgccataacgggcgactagaacactataccacaaccctactctatctaccaacatcctccaacactatttacctaacaaagcaaagttaaactccc 9668470  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||||| ||||||||||||||||| ||  |||||||  | ||||||   |||||||||| ||||||||||||||   | ||||||||||||||||    
T  9668469 tcaacctcctaacccccaacccttcagactcctttggagaacacaaagtattccaacctatccaagtaattttccgacggtcctcactcccccc 9668376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 20004565 - 20004669
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||||||| || | ||||| ||||||||||||||||||||||||||||  || ||| | ||||||||  ||| ||||||||||||||| ||||||||     
T  20004565 ataccacaaatctcccctatcaactaacatcctccaacaccatttttctaacaaagcagtgttaaactccctcatcttcctaacccccaaacctccatga 20004664  T
Q  135 tcctt 139  Q
    |||||    
T  20004665 tcctt 20004669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 22724957 - 22724878
Alignment:
Q  51 ctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctcc 130  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||| | ||||| |||| |||||    
T  22724957 ctatccactaacatcctccaacaccattttcctagtaaggcaacattaaattccttcaactgcttaacctccaaacctcc 22724878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 179
Target Start/End: Original strand, 12646127 - 12646271
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    ||||||||| || |||||||| ||||||| |||||||||||||||| |||  ||  |||  ||||||||| ||||| ||||||| ||||||||||||| |    
T  12646127 ataccacaatccatctctatctactaacaacctccaacaccattttcctaacaaaacaaagttaaactctctcaacctcctaacacccaaccctccatac 12646226  T
Q  135 tcctttttacaacacatgatattccaaccaatccaagtaattttt 179  Q
    ||| |  |  ||||||    ||||||||||||||||| |||||||    
T  12646227 tccctcctcaaacacaaagaattccaaccaatccaagaaattttt 12646271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 15018269 - 15018389
Alignment:
Q  21 gcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccc 120  Q
    ||||||||||| | |||||| || ||  | ||||||||| ||| |||||||||||||||  ||| |||||||||||||||||| |||||||  |||||||    
T  15018269 gcgactaaaactctataccaaaatccacccctatccactgacaacctccaacaccatttccctaataaggcaatattaaactccttcaactgtctaaccc 15018368  T
Q  121 ccaaccctccatgctcctttt 141  Q
      |||||||||  ||||||||    
T  15018369 ataaccctccaaactcctttt 15018389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 6824031 - 6824124
Alignment:
Q  49 ctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctccttttt 142  Q
    |||||||||| ||||| ||||||||||||||   || |||||| | ||||||||| ||||||| ||| || ||||||||| |||||||||||||    
T  6824031 ctctatccaccaacattctccaacaccatttgcttaataaggctaaattaaactccttcaactgcctcactcccaacccttcatgctccttttt 6824124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 25380957 - 25380822
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||||||||  | |||||| |||||  | ||||||||||| |||||| | ||||||||    | |||||||| |||||| || |    
T  25380957 acctcgccataacgggcgactaaaattctataccaaaaaccacccctatccactaatatcctctagcaccatttccacaataaggcaacattaaattcct 25380858  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttt 141  Q
    ||||||  ||||||| ||||||||||| ||||||||    
T  25380857 tcaactgtctaaccctcaaccctccatactcctttt 25380822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 44028759 - 44028649
Alignment:
Q  30 acacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctc 129  Q
    ||||| |||||||| || ||||||||||||||||||||||| ||||| ||  |||| || ||   ||||||||| |||||||  ||||| ||||| ||||    
T  44028759 acacggtaccacaacccatctctatccactaacatcctccagcaccacttacctagcaacgcctcattaaactccttcaactgtctaacacccaaacctc 44028660  T
Q  130 catgctccttt 140  Q
    ||| |||||||    
T  44028659 catactccttt 44028649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 16213762 - 16213826
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccat 77  Q
    |||||| ||||||||||||| |||||||| | |||||||| || ||||||||| |||||||||||    
T  16213762 cataacgggcgactaaaacatgataccacgacccttctctgtcaactaacatcttccaacaccat 16213826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 45422115 - 45422283
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    ||||| |||| ||||||||||||  || | ||||| ||||||| ||||||||||||  |||  || ||| ||||||| || |||||||  || |||||||    
T  45422115 actaagacactataccacaaaccacctttgtccaccaacatccgccaacaccatttacctaacaaagcactattaaattccttcaactgtctcaccccca 45422214  T
Q  124 accctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcac 192  Q
    | ||||||| ||||||| |  |||| |   | ||||| || ||||||||||||||| |||| |||||||    
T  45422215 aacctccattctcctttgtggaacaaacagttttccagcctatccaagtaatttttctatgatcctcac 45422283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 355425 - 355375
Alignment:
Q  30 acacgataccacaaaccttctctatccactaacatcctccaacaccatttt 80  Q
    |||||||||||||| || ||  |||||||||||||||||||||||||||||    
T  355425 acacgataccacaacccctccttatccactaacatcctccaacaccatttt 355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 9409673 - 9409751
Alignment:
Q  61 acatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    ||||| |||||||||| ||||||| ||| ||||| ||||||||| | | ||||||||||||||| ||||| | ||||||    
T  9409673 acatcttccaacaccacttttctaataaagcaatgttaaactctcttatcttcctaacccccaagcctcctttctcctt 9409751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 28253336 - 28253433
Alignment:
Q  45 ccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctccttttt 142  Q
    ||||| || ||||||||||  | ||||||||||||| |||  | ||| | |||||||||| ||||| |||| || ||||||||||||| |||||||||    
T  28253336 ccttccctctccactaacaaacgccaacaccattttcctaacagggctaaattaaactctctcaacctccttacacccaaccctccatactccttttt 28253433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 26894161 - 26894057
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    |||||||||||| | ||||||||||||  || | ||||| ||||||| ||||||||||||| |||  || |  | ||||||||| ||||||||||  |||    
T  26894161 ggcgactaaaaccctataccacaaaccacctatgtccaccaacatccgccaacaccattttcctaacaaagttaaattaaactccttcaacttccgcacc 26894062  T
Q  120 cccaa 124  Q
    |||||    
T  26894061 cccaa 26894057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 26899600 - 26899496
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    |||||||||||| | ||||||||||||  || | ||||| ||||||| ||||||||||||| |||  || |  | ||||||||| ||||||||||  |||    
T  26899600 ggcgactaaaaccctataccacaaaccacctatgtccaccaacatccgccaacaccattttcctaacaaagttaaattaaactccttcaacttccgcacc 26899501  T
Q  120 cccaa 124  Q
    |||||    
T  26899500 cccaa 26899496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 13550712 - 13550830
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||||| | |||||||||| |  ||||||| || |||| |||||||||||||||  |||  || || ||||||||||| |||||  |||| |||||||    
T  13550712 actaaaaccctataccacaaatcacctctatcaaccaacaacctccaacaccatttccctaacaatgctatattaaactccttcaatctcctcaccccca 13550811  T
Q  124 accctccatgctccttttt 142  Q
    | || |||  |||||||||    
T  13550812 aaccgccacactccttttt 13550830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 13551165 - 13551283
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||||| | |||||||||| |  ||||||| || |||| |||||||||||||||  |||  || || ||||||||||| |||||  |||| |||||||    
T  13551165 actaaaaccctataccacaaatcacctctatcaaccaacaacctccaacaccatttccctaacaatgctatattaaactccttcaatctcctcaccccca 13551264  T
Q  124 accctccatgctccttttt 142  Q
    | || |||  |||||||||    
T  13551265 aaccgccacactccttttt 13551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 31071341 - 31071300
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacacca 76  Q
    |||||||||||| |||||||| ||||||||| ||||||||||    
T  31071341 ataccacaaaccctctctatcaactaacatcatccaacacca 31071300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 28598563 - 28598599
Alignment:
Q  49 ctctatccactaacatcctccaacaccatttttctag 85  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  28598563 ctctatccaccaacatactccaacaccatttttctag 28598599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 33583903 - 33583855
Alignment:
Q  93 atattaaactctttcaacttcctaacccccaaccctccatgctcctttt 141  Q
    |||||||||||  |||||| ||| |||||||||||||||| ||||||||    
T  33583903 atattaaactccctcaactgccttacccccaaccctccatactcctttt 33583855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 5327340 - 5327533
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||| | ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||||||| |    
T  5327340 acctcgccatatcgggcgactaaaacatggtaccataaaccttctctatccactaacatcctccaacaccatttccctagtaaagcaagattaaactcct 5327439  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||||||||||||| |||||||| || | |||||||||| ||||||   |||||||||| ||||||||||||||| || ||||||||||||||||    
T  5327440 tcaacttcctaactcccaacccccctttctcctttttagaacacacagtattccaacctatccaagtaatttttctaaggtcctcactcccccc 5327533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 41340110 - 41340302
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||| | ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||||||| |    
T  41340110 acctcgccatatcgggcgactaaaacatggtaccacaaaccttctctatccactaacatcctccaacaccatttccctagtaaagcaaaattaaactcct 41340209  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    |||||||||| | |||||||||||| | ||||| |||| |||| |   |||||||||| ||||||||||||||| || ||||||||||| ||||    
T  41340210 tcaacttcctga-ccccaaccctcctttctcctctttagaacatacagtattccaacctatccaagtaatttttctaaggtcctcactcacccc 41340302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 18671762 - 18671937
Alignment:
Q  21 gcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccc 120  Q
    |||||||||||| |||||||||| ||| ||||||| |||||||||||||||||||||||  ||||||| |||| |||||| || |||||||||||||||     
T  18671762 gcgactaaaacatgataccacaaccctgctctatcaactaacatcctccaacaccatttacctagtaaagcaacattaaattccttcaacttcctaacca 18671861  T
Q  121 ccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    |||| ||||||||||| |||||| |||||| | |||||||||| ||||| ||||||||| ||   |||||||||||    
T  18671862 ccaaacctccatgctcatttttagaacacaaggtattccaacctatccaggtaatttttctacaatcctcactccc 18671937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 18767992 - 18768175
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| || |||||||||  |||||||||| ||||||||||| |||||||||||||||||||||||  ||||||| |||||||||||||| |||||  |    
T  18767992 cataacgggagactaaaacctgataccacaacccttctctatcaactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatct 18768091  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    |||||||||||| ||||||  |||||||||| ||||||    || |||||| ||||||||||||||| ||   |||||||||||    
T  18768092 cctaacccccaaacctccaaactcctttttagaacacaaagaatcccaacctatccaagtaatttttctacaatcctcactccc 18768175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 34457714 - 34457548
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| || |||||||||  |||||||||| ||||||||||| |||||||||  ||||||||||||  ||||||| |||||||||||||| |||||  |    
T  34457714 cataacgggtgactaaaacctgataccacaacccttctctatcaactaacatcacccaacaccatttacctagtaaagcaatattaaactccttcaatct 34457615  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaattttt 179  Q
    |||||||||||| |||||||||||| ||||| ||||||   ||| |||||| |||||||||||||||    
T  34457614 cctaacccccaaacctccatgctccgttttagaacacaatgtatcccaacctatccaagtaattttt 34457548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 178
Target Start/End: Complemental strand, 36227683 - 36227542
Alignment:
Q  36 taccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgct 135  Q
    ||||| |||||||||||||| ||||||||||||||| |||| ||  ||||||| |||| ||||||||| ||||| ||||||| |||||||||||||||||    
T  36227683 taccataaaccttctctatcaactaacatcctccaataccacttacctagtaaagcaacattaaactccttcaatttcctaaaccccaaccctccatgct 36227584  T
Q  136 cctttttacaacacatgatattccaaccaatccaagtaatttt 178  Q
    |||||||| |||||| | |||||||||| ||||||| ||||||    
T  36227583 cctttttagaacaca-ggtattccaacctatccaagaaatttt 36227542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 17856313 - 17856445
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||  |||| || || | ||||||||| ||||||||    
T  17856313 cataacgggcgactaaaacatgataccacaatccttctctatccactaacatcctccaacaccatttccctagcaatgctacattaaactccttcaactt 17856412  T
Q  113 cctaacccccaaccctccatgctcctttttacaa 146  Q
    ||| | |||||||||||||  |||||||||||||    
T  17856413 cctga-ccccaaccctccaaactcctttttacaa 17856445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 178
Target Start/End: Complemental strand, 13553747 - 13553575
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||||| ||||| ||||||||| ||| ||||||| || |||||||||||||||||||| ||||  || |||| |||||||||      
T  13553747 acctcgccataacgggcgactagaacactataccacaaccctactctatctaccaacatcctccaacaccatttatctaacaaagcaaaattaaactccc 13553648  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttt 178  Q
    ||||| |||||||||||||||| |||  |||||||  | ||||||   |||||||||| ||||||||||||||    
T  13553647 tcaacctcctaacccccaaccccccagactcctttggagaacacaaagtattccaacctatccaagtaatttt 13553575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 45993151 - 45993277
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    ||||||| |||||| |||||||||||| | |||||| |||||  | |||||||||||||||||||||||||||||  ||||||| |||| |||||||||     
T  45993151 cacctcgccataacgggcgactaaaactctataccaaaaaccacccctatccactaacatcctccaacaccatttccctagtaatgcaacattaaactcc 45993250  T
Q  105 ttcaacttcctaacccccaaccctcca 131  Q
    |||||||  |||||||| |||||||||    
T  45993251 ttcaactgtctaacccctaaccctcca 45993277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 19544936 - 19544832
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| || || ||||||||||| ||||||| ||||||||||||  ||| ||||||| ||||||||||  |||||| ||| ||||| |||||||||| |    
T  19544936 ataccaaaacccatctctatccaccaacatccgccaacaccatttgcctaataaggcactattaaactccctcaactgcctgacccctaaccctccatac 19544837  T
Q  135 tcctt 139  Q
    |||||    
T  19544836 tcctt 19544832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 13440644 - 13440738
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcc 114  Q
    |||||||||||| ||||||||||||||  |||||||||| ||||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||    
T  13440644 ggcgactaaaacccgataccacaaaccacctctatccaccaacatccgccaacaccattttcctaacaaagctaaattaaactccttcaatttcc 13440738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 34104083 - 34104187
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| || || ||| ||||||  ||||||||||| |||||||| ||||||||| || ||||||||||  |||| | ||| ||||| |||||||||| |    
T  34104083 ataccaaaacccctctttatccatcaacatcctccagcaccatttgtctagtaagacactattaaactccctcaaatgcctgacccctaaccctccatac 34104182  T
Q  135 tcctt 139  Q
    |||||    
T  34104183 tcctt 34104187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 19735118 - 19735168
Alignment:
Q  29 aacacgataccacaaaccttctctatccactaacatcctccaacaccattt 79  Q
    ||||| ||||||||||||| ||||||| || ||||||||||||||||||||    
T  19735118 aacactataccacaaacctactctatcgaccaacatcctccaacaccattt 19735168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 20918566 - 20918652
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccc 121  Q
    ||||||||||||| ||||||| ||||||| |||| ||||||||||| |||| || ||| | |||||||| | ||  |||||||||||    
T  20918566 ataccacaaacctcctctatctactaacaacctcgaacaccattttcctagcaaagcagtgttaaactcctgcattttcctaacccc 20918652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 33821066 - 33820988
Alignment:
Q  62 catcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctccttt 140  Q
    ||||||||||||||||||||||| ||| || |||||||||||  |||| |  || |||||||||||||||  |||||||    
T  33821066 catcctccaacaccatttttctaataaagctatattaaactccatcaagtgtctgacccccaaccctccaaactccttt 33820988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 234969 - 234868
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    ||||||| ||||||| |||| ||||| || ||||||||||||  | |  || |||||||||||||||  |||| || |||| ||||||||||||| ||||    
T  234969 ccacaaagcttctctctccaataacaaccaccaacaccatttacccaacaaagcaatattaaactctcgcaacctcgtaactcccaaccctccatactcc 234870  T
Q  138 tt 139  Q
    ||    
T  234869 tt 234868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 39931075 - 39931025
Alignment:
Q  90 gcaatattaaactctttcaacttcctaacccccaaccctccatgctccttt 140  Q
    |||||||||| |||  ||||| ||||||||||||||||||||| |||||||    
T  39931075 gcaatattaagctccctcaacctcctaacccccaaccctccatactccttt 39931025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 4937643 - 4937558
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| |||||||||||||||  | |  || ||||| ||||||||  ||||| || |||||||||||||||||| ||||||    
T  4937643 tccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 4937558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 11276779 - 11276678
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    ||||||| |||| || |||| ||||| || ||||||||||||  | |  || ||||| ||||||||  ||||| || |||||||||||||||||| ||||    
T  11276779 ccacaaagcttccctctccaataacaaccgccaacaccatttacccaccaaagcaatgttaaactccctcaacctcgtaacccccaaccctccatactcc 11276680  T
Q  138 tt 139  Q
    ||    
T  11276679 tt 11276678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 23887716 - 23887785
Alignment:
Q  62 catcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctcca 131  Q
    ||||||||||||||||||| |||  || || |||||||||||  ||||||  || |||||||||||||||    
T  23887716 catcctccaacaccattttcctaacaaagctatattaaactccctcaactgtctgacccccaaccctcca 23887785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 23898892 - 23898961
Alignment:
Q  62 catcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctcca 131  Q
    ||||||||||||||||||| |||  || || |||||||||||  ||||||  || |||||||||||||||    
T  23898892 catcctccaacaccattttcctaacaaagctatattaaactccctcaactgtctgacccccaaccctcca 23898961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 29968583 - 29968684
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    ||||||| |||| || |||| ||||| || ||||||||||||  | |  || ||||||||||||||  ||||  || |||||||||||||||||| ||||    
T  29968583 ccacaaagcttccctctccaataacaaccgccaacaccatttacccaacaaagcaatattaaactccctcaatctcgtaacccccaaccctccatactcc 29968682  T
Q  138 tt 139  Q
    ||    
T  29968683 tt 29968684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 17721301 - 17721345
Alignment:
Q  95 attaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||||||||| ||||| || |||||||||||||||||| ||||||    
T  17721301 attaaactctctcaacctcgtaacccccaaccctccatactcctt 17721345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 40018376 - 40018280
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctcca 131  Q
    ||||| ||| |||||  |||| ||||||||||||||||| ||||||  || ||| |||| ||||||  | |||| | ||||||||||||| ||||||    
T  40018376 ataccgcaacccttccttatctactaacatcctccaacatcattttcttaataaagcaaaattaaatcccttcatcctcctaacccccaaacctcca 40018280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 46626417 - 46626533
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    ||||| |||| ||||||||||||  |||| ||||  ||||||| ||||||||||||  |||  || ||| ||||||| || ||||| |  || |||||||    
T  46626417 actaagacactataccacaaaccacctctgtccaacaacatccgccaacaccatttacctaacaaagcactattaaattccttcaattgtctcaccccca 46626516  T
Q  124 accctccatgctccttt 140  Q
    | ||||||| |||||||    
T  46626517 aacctccattctccttt 46626533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 23942667 - 23942854
Alignment:
Q  9 tcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttca 108  Q
    |||||| ||| ||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||  ||||||| |||| ||||||||| ||||    
T  23942667 tcgtcacaacgggcgactaaaacatgataccacaacccttctctatcaactaacaacctccaacaccatttacctagtaaagcaacattaaactccttca 23942766  T
Q  109 acttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    ||||||| |||||||| |||||||||||||||||| |||||| | |||||||||| ||||||| ||||||| ||   |||||||||||    
T  23942767 acttcctgacccccaaacctccatgctcctttttagaacacaaggtattccaacctatccaagaaatttttctaaaatcctcactccc 23942854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 6 - 188
Target Start/End: Original strand, 6901486 - 6901667
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| ||||||||||||| ||||||||||||||| | ||||| |||||||||| ||||||||||| | |||||| |||| || |||||| |    
T  6901486 acctcgccataacgggcgactaaaacatgataccacaaaccttgtttatcc-ctaacatcctacaacaccatttatgtagtaaagcaagatgaaactcct 6901584  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcc 188  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||   ||||  |||| ||||| ||||||||| ||| ||||    
T  6901585 tcaacttccttacccccaaccctccttgctcctttttagaacacacattattaaaacctatccaggtaatttttctatagtcc 6901667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 4987629 - 4987503
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    ||||||| |||||| |||||||||||| | |||||| |||||  | | |||||||||||||||||||||||||||  |||||||||||| |||||||||     
T  4987629 cacctcgccataacgggcgactaaaactctataccaaaaaccacccccatccactaacatcctccaacaccatttccctagtaaggcaacattaaactcc 4987530  T
Q  105 ttcaacttcctaacccccaaccctcca 131  Q
    |||||||  |||||||| |||||||||    
T  4987529 ttcaactgtctaacccctaaccctcca 4987503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 174
Target Start/End: Original strand, 24794323 - 24794491
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||| | ||||| ||||||||||||| ||||||| || ||||||||||||||||||||  |||  || |||| |||||||||      
T  24794323 acctcgccataacgggcgacaagaacactataccacaaacctactctatctaccaacatcctccaacaccatttacctaacaaagcaaaattaaactccc 24794422  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaa 174  Q
    ||||  ||||||||||||||||||||  ||||||   | ||||||   |||||||||| ||||||||||    
T  24794423 tcaatctcctaacccccaaccctccagactccttcgaagaacacaaagtattccaacctatccaagtaa 24794491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 43249367 - 43249174
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||| | |||||||| ||||| ||||||||| ||| ||||||| || || |||||||||||||||||  |||  || |||| ||||||||||     
T  43249367 acctcgccatagcgggcgactagaacactataccacaaccctactctatctaccaatatcctccaacaccatttacctaacaaagcaaaattaaactctc 43249268  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaattttt-atatggtcctcactcccccc 199  Q
    ||||| |||||| |||||||||||||  |||||||  | ||| ||   |||||||||| |||||||||||||||   | ||||||||||||||||    
T  43249267 tcaacctcctaa-ccccaaccctccagactcctttgaagaactcaaagtattccaacctatccaagtaatttttccgacggtcctcactcccccc 43249174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 11393911 - 11393718
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||| | ||||| ||||||||||||| ||||||| || |||| |||||||||||||||  |||  || |||| |||||||||      
T  11393911 acctcgccataacgggcgacaagaacactataccacaaacctactctatcgaccaacaacctccaacaccatttacctaacaatgcaaaattaaactccc 11393812  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||||   |||||||||||||||||||  |||||||  | |||| |   |||| ||||| ||||||||||||||   | ||||||||||||||||    
T  11393811 tcaatcacctaacccccaaccctccagactcctttgaagaacataaagtatttcaacctatccaagtaattttccgacggtcctcactcccccc 11393718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 12134904 - 12134978
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttt 80  Q
    |||||| |||||| ||||||||||| | ||||||||||||||||||| | |||||||||||||||||||||||||    
T  12134904 acctcgccataacgggcgactaaaatatgataccacaaaccttctctcttcactaacatcctccaacaccatttt 12134978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 44082568 - 44082487
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaat 94  Q
    |||||| ||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||||||  ||||||| |||||    
T  44082568 cataacgggcgactaaaacctgataccacaacccttctctatcaactaacatcctccaacaccatttacctagtaaagcaat 44082487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 37165655 - 37165550
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    ||||||||| ||| ||||||||||||||||||||||||| || ||| ||| ||  ||||||||||| || ||||||  ||| |||||||| || |||| |    
T  37165655 ataccacaagcctcctctatccactaacatcctccaacatcactttcctaatagagcaatattaaattccttcaaccgcctcacccccaaacccccattc 37165556  T
Q  135 tccttt 140  Q
    ||||||    
T  37165555 tccttt 37165550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 15439723 - 15439811
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||| ||||| ||||||| ||| ||||||  ||||||||||||  ||||||||||| ||||||||||  |||||| |||||||||||    
T  15439723 ataccataaaccatctctattcaccaacatctgccaacaccatttacctagtaaggcactattaaactccctcaactgcctaaccccca 15439811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 15531027 - 15531115
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||| ||||| ||||||| ||| ||||||  ||||||||||||  ||||||||||| ||||||||||  |||||| |||||||||||    
T  15531027 ataccataaaccatctctattcaccaacatctgccaacaccatttacctagtaaggcactattaaactccctcaactgcctaaccccca 15531115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 12341175 - 12341278
Alignment:
Q  37 accacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctc 136  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||| |||  || || |||||||| || |||||||  || |||||||| || |||| |||    
T  12341175 accacaaccctcctctatccactaacatcctccaacaccactttcctaacaaagccatattaaattccttcaactgtctcacccccaaacccccattctc 12341274  T
Q  137 cttt 140  Q
    ||||    
T  12341275 cttt 12341278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 20824908 - 20825007
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||||||| | ||||| ||||||| |||||||||||||||  | |  || ||||| ||||||||| ||||| ||||||| ||||||||||||| ||||    
T  20824908 ccacaaacctcccctatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 20825007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 7452958 - 7453122
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    ||||||||||||  |||| ||||| ||||||| ||||||||| ||  |||  || ||| ||||||| || |||||||  || |||||||| ||||||| |    
T  7452958 ataccacaaaccacctctgtccaccaacatccgccaacaccacttacctaacaaagcactattaaattcattcaactgtctcacccccaaacctccatac 7453057  T
Q  135 tcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||||||||  |||| |   | |||||||| ||||| | ||||||| |||| |||||||| |||||    
T  7453058 tccttttttgaacaaacagttttccaacctatccaggaaatttttctatgatcctcactgccccc 7453122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 25320408 - 25320522
Alignment:
Q  26 taaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaac 125  Q
    ||||||||  |||||||| || ||| | ||||| ||||||||||||||||||||| | |  || | || |||||||||| | |||  |||||||||||||    
T  25320408 taaaacacagtaccacaacccctctttgtccaccaacatcctccaacaccattttcccaacaaagaaaaattaaactctcttaaccgcctaacccccaac 25320507  T
Q  126 cctccatgctccttt 140  Q
    || |||| |||||||    
T  25320508 cccccatcctccttt 25320522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 37434477 - 37434391
Alignment:
Q  51 ctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    ||||| ||||||| || ||||||||||||| | |  || ||||| ||||||||| ||||| ||||||| ||||||||||||| ||||    
T  37434477 ctatcaactaacagccgccaacaccattttcccaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 37434391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 36025127 - 36025216
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaa 124  Q
    |||||| || ||| |||||||||| ||||||| ||||||||||| | ||| ||| ||||||||||| ||  |||||| ||| ||||||||    
T  36025127 ataccataaccctcctctatccaccaacatccgccaacaccattatcctaataaagcaatattaaattcactcaactgcctcacccccaa 36025216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 132
Target Start/End: Original strand, 6245702 - 6245785
Alignment:
Q  49 ctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccat 132  Q
    |||||||||| ||||||| ||||||| ||||  |||  || ||  |||||||||| | ||||||||| ||||||||||||||||    
T  6245702 ctctatccaccaacatccgccaacacaatttacctaacaaagcgctattaaactcctgcaacttcctcacccccaaccctccat 6245785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 17700089 - 17700188
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||||||| | ||||| ||||||| || ||||||||||||  | |  || ||||| ||||||||| ||||| |||| || ||||||||||||| ||||    
T  17700089 ccacaaacctcccctatcaactaacagccgccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctcacacccaaccctccatactcc 17700188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 5585309 - 5585399
Alignment:
Q  49 ctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    ||||||| ||||||| |  ||||||||||||  ||||||| ||||||||||| ||  | |||||||| ||| |||| ||||||| ||||||    
T  5585309 ctctatcgactaacaactaccaacaccatttacctagtaaagcaatattaaattcccttaacttcctcacctccaatcctccatactcctt 5585399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 29721422 - 29721352
Alignment:
Q  57 actaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccc 127  Q
    |||||||||||||||||||||||  |||  || |||| ||||||||| ||||| ||||| || ||||||||    
T  29721422 actaacatcctccaacaccatttgcctaacaacgcaagattaaactccttcaatttcctcacacccaaccc 29721352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 7925011 - 7925096
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| |||||||||||||||  | |  || ||||| ||||||||  ||||| || |||||||||||||||||| ||||||    
T  7925011 tccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 7925096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 8300428 - 8300513
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| |||||||||||||||  | |  || ||||| ||||||||  ||||| || |||||||||||||||||| ||||||    
T  8300428 tccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 8300513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 9923226 - 9923311
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| || |||||||||||| || |  || || | |||||||||| ||||| || |||||||||||||||||| ||||||    
T  9923226 tccaataacaaccgccaacaccatttatccaacaaagctaaattaaactctctcaacctcgtaacccccaaccctccatactcctt 9923311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 41664847 - 41664798
Alignment:
Q  90 gcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    ||||| ||||||||| ||||| || |||||||||||||||||| ||||||    
T  41664847 gcaatgttaaactctctcaacctcgtaacccccaaccctccatactcctt 41664798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 8902433 - 8902537
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    ||||||||| ||  ||||||| |||||||||| ||||||||||||| |||  |  || | |||||| ||| ||| | ||||||||||||| ||||| | |    
T  8902433 ataccacaagccagctctatcaactaacatccgccaacaccattttcctaagagagccagattaaattctctcatcctcctaacccccaaacctccttcc 8902532  T
Q  135 tcctt 139  Q
    |||||    
T  8902533 tcctt 8902537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 25193692 - 25193800
Alignment:
Q  33 cgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccat 132  Q
    |||||||| || || ||||||||||| ||||||||||| ||||||||| ||| ||| |||  |||||| ||  | |||| ||| || ||||| ||||||     
T  25193692 cgataccagaacccatctctatccaccaacatcctccagcaccattttcctaataaagcacaattaaattcccttaactgcctcacacccaatcctccaa 25193791  T
Q  133 gctcctttt 141  Q
     ||||||||    
T  25193792 actcctttt 25193800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 53810425 - 53810590
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||   ||||||  ||||||||||||| ||||| ||    
T  53810425 cataacagacgactaaaacatggtaccacaaaccttctctatcgactaacatcctccaacaccatttacatagtaaaacaatattaaactccttcaattt 53810524  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttt 178  Q
    ||||||| |||| ||||||||||| |||||| |||||| | |||||||||| ||||||||| ||||    
T  53810525 cctaaccaccaaacctccatgctcttttttaaaacacaaggtattccaacctatccaagtattttt 53810590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 26694512 - 26694695
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| | ||||||||||  |||||| ||| ||| |||||||||||||||||||||||||||||||  ||||||| |||||||||||||| |||||  |    
T  26694512 cataacggacgactaaaacctgataccgcaaccctactctatccactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatct 26694611  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    ||| |||||||| ||||||| || ||||||| ||||||   ||| |||||| ||||||||||||||| ||   |||||||||||    
T  26694612 cctcacccccaaacctccatacttctttttagaacacaaagtatcccaacctatccaagtaatttttctacaatcctcactccc 26694695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 8935650 - 8935786
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    ||||||| ||||||  ||||||||||| | |||||| |||||  | |||||||||||||||||||||||||||||  ||||||||||||||||||||||     
T  8935650 cacctcgccataacgagcgactaaaactctataccaaaaaccacccctatccactaacatcctccaacaccatttccctagtaaggcaatattaaactcc 8935749  T
Q  105 ttcaacttcctaacccccaaccctccatgctcctttt 141  Q
    |||||||  |||||||| |||||||||  ||||||||    
T  8935750 ttcaactgtctaacccctaaccctccaaactcctttt 8935786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 19648278 - 19648393
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    ||||||| ||||||||||||||||||| | |||||| |||||  | |||||||||||||||||||||||||||||  |||||||||||| |||||||||     
T  19648278 cacctcgccataacaggcgactaaaactctataccaaaaaccacccctatccactaacatcctccaacaccatttccctagtaaggcaacattaaactcc 19648377  T
Q  105 ttcaacttcctaaccc 120  Q
    |||||||  |||||||    
T  19648378 ttcaactgtctaaccc 19648393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 2365612 - 2365773
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| |||||| ||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||| ||| || |||||||||||| | |||||||    
T  2365612 ataccataaacctcctctatcaactaacatcctccatcaccatttttctaataaagcaatattaaactctctcatctacctaacccccaaacttccatgc 2365711  T
Q  135 tcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    |||||     |||| |   | |||||||||||||||| ||||||  |||| |||||||||||    
T  2365712 tccttagctaaacaaacatttttccaaccaatccaagaaattttcctatgttcctcactccc 2365773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 42953068 - 42952900
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||| | ||||| ||||||||||||| ||||||| || ||||||||||||||||||||  |||  || |||| |||||||||      
T  42953068 acctcgccataacgggcgacaagaacactataccacaaacctactctatctaccaacatcctccaacaccatttacctaacaaagcaaaattaaactccc 42952969  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaa 174  Q
    ||||  ||||||||||||||||||||  ||||||   | ||||||   |||||||||| ||||||||||    
T  42952968 tcaatctcctaacccccaaccctccagactccttcgaagaacacaaagtattccaacctatccaagtaa 42952900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 23657873 - 23657979
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    |||||||  ||||| |||||||||||| | |||||| |||||  | ||||||||||||||||| |||||||||||  ||||||||||||||||||||||     
T  23657873 cacctcgctataacgggcgactaaaactctataccaaaaaccacccctatccactaacatccttcaacaccatttccctagtaaggcaatattaaactcc 23657972  T
Q  105 ttcaact 111  Q
    |||||||    
T  23657973 ttcaact 23657979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 19115028 - 19115148
Alignment:
Q  21 gcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccc 120  Q
    ||||||||||| | |||||| || ||  | ||||||||||||| |||||||||||||||  ||| ||| |||||||||||||| |||||||  |||||||    
T  19115028 gcgactaaaactctataccaaaatccacccctatccactaacaacctccaacaccatttccctaataaagcaatattaaactccttcaactgtctaaccc 19115127  T
Q  121 ccaaccctccatgctcctttt 141  Q
    | |||||||||  ||||||||    
T  19115128 ctaaccctccaaactcctttt 19115148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 23873025 - 23872903
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    |||||||||||| ||||||||||||||  ||||||| || ||||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||  |||    
T  23873025 ggcgactaaaacccgataccacaaaccacctctatctaccaacatccgccaacaccattttcctaacaaagctaaattaaactccttcaatttccgtacc 23872926  T
Q  120 cccaaccctccatgctccttttt 142  Q
    ||||| || |||| |||||||||    
T  23872925 cccaaaccgccatactccttttt 23872903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 55299203 - 55299325
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    |||||||||||| ||||||||||||||  |||||||||| ||||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||  |||    
T  55299203 ggcgactaaaacccgataccacaaaccacctctatccaccaacatccgccaacaccattttcctaacaaagctaaattaaactccttcaatttccgcacc 55299302  T
Q  120 cccaaccctccatgctccttttt 142  Q
    ||||| || |||  |||||||||    
T  55299303 cccaaaccgccacactccttttt 55299325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 7662853 - 7662685
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    ||||| |||| ||||||||||||  |||| ||||| ||||||| ||||||||||||  |||  || ||| ||||||| || |||||||  || |||||||    
T  7662853 actaagacactataccacaaaccacctctgtccaccaacatccgccaacaccatttacctaacaaagcactattaaattccttcaactgtctcaccccca 7662754  T
Q  124 accctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcac 192  Q
    | ||||||| ||||||| |  |||| |  || ||||| || ||||||||||||||| |||| |||||||    
T  7662753 aacctccattctcctttgtggaacaaacaattttccagcctatccaagtaatttttctatgatcctcac 7662685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 3129534 - 3129416
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||||| | ||||||||||||  |||||||||| ||||||| ||||||||||||  |||  || ||| |||||||||| | || ||  || |||||||    
T  3129534 actaaaaccctataccacaaaccacctctatccaccaacatccgccaacaccatttccctaacaaagcattattaaactcctgcagctgtctcaccccca 3129435  T
Q  124 accctccatgctccttttt 142  Q
    | |||||||||||||||||    
T  3129434 aacctccatgctccttttt 3129416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 55725240 - 55725096
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| || || |||||||| ||||||| |||||||||||||||  |||  || ||||  ||||||||| ||||| ||||||| ||||||||||||| |    
T  55725240 ataccataatccatctctatctactaacaacctccaacaccatttccctaacaaagcaaagttaaactctctcaacctcctaacacccaaccctccatac 55725141  T
Q  135 tcctttttacaacacatgatattccaaccaatccaagtaattttt 179  Q
    ||| |  |  ||||||    ||||||||||||||||| |||||||    
T  55725140 tccctcctcaaacacaaagaattccaaccaatccaagaaattttt 55725096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 20675613 - 20675717
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    |||||||||||| | ||||||||||||  |||| ||||| ||||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||  |||    
T  20675613 ggcgactaaaaccctataccacaaaccacctctgtccaccaacatccgccaacaccattttcctaacaaagctaaattaaactccttcaatttccgcacc 20675712  T
Q  120 cccaa 124  Q
    |||||    
T  20675713 cccaa 20675717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 23647764 - 23647679
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| ||||||||||||||| || |  || ||||| ||||||||  ||||| || |||||||||||||||||| ||||||    
T  23647764 tccaataacaacctccaacaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 23647679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 53486499 - 53486402
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaac 110  Q
    |||||| |||||||||||| |||||||| ||||| |  ||||| |||| ||||||||||||||| ||| ||| ||| || | |||||  |||||||||    
T  53486499 cataacgggcgactaaaactcgataccaaaaaccattcctatcaactagcatcctccaacaccactttcctaataaagccaaattaatttctttcaac 53486402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 10392191 - 10392151
Alignment:
Q  33 cgataccacaaaccttctctatccactaacatcctccaaca 73  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  10392191 cgataccacaaaccctctctatcaactaacatcctccaaca 10392151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 43516282 - 43516178
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| |||||  |||||||| | ||||||  ||||||||||||  |||  || ||| ||||||| || | ||||||||| |||||||||||||||| |    
T  43516282 ataccataaaccacctctatccgccaacatctgccaacaccatttacctaacaaagcactattaaattcctgcaacttcctcacccccaaccctccatac 43516183  T
Q  135 tcctt 139  Q
    |||||    
T  43516182 tcctt 43516178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 39983758 - 39983664
Alignment:
Q  33 cgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccc 127  Q
    ||||||||||| || ||| ||| |||||||||| |||||||||||||| |||  || || | ||||||  || ||| | ||||||||||||||||    
T  39983758 cgataccacaacccctctttattcactaacatcgtccaacaccattttcctaacaatgccaaattaaaagctctcaccctcctaacccccaaccc 39983664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 12726901 - 12726954
Alignment:
Q  26 taaaacacgataccacaaaccttctctatccactaacatcctccaacaccattt 79  Q
    ||||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||    
T  12726901 taaaacacggtaccaaaaaccctctctatctaccaacatcctccagcaccattt 12726954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 19755876 - 19755977
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    ||||||| |||| || |||| ||||| || |||||||||||| || |  || ||||| ||||||||| ||||| |  |||| ||||||||||||| ||||    
T  19755876 ccacaaagcttccctctccaataacaaccgccaacaccatttatccaacaaagcaatgttaaactctctcaaccttgtaacacccaaccctccatactcc 19755975  T
Q  138 tt 139  Q
    ||    
T  19755976 tt 19755977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 19783930 - 19783829
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    ||||||| |||| || |||| ||||| || |||||||||||| || |  || ||||| ||||||||| ||||| |  |||| ||||||||||||| ||||    
T  19783930 ccacaaagcttccctctccaataacaaccgccaacaccatttatccaacaaagcaatgttaaactctctcaaccttgtaacacccaaccctccatactcc 19783831  T
Q  138 tt 139  Q
    ||    
T  19783830 tt 19783829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 23642106 - 23642021
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| |||||||||||||||  | |  || ||||| ||||||||  ||||| || |||||||||||||||||| ||||||    
T  23642106 tccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 23642021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 29553296 - 29553239
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctcca 70  Q
    |||||| || ||||||||| | |||||| |||||  ||||||||||||||||||||||    
T  29553296 cataacgggtgactaaaactctataccaaaaaccacctctatccactaacatcctcca 29553239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 17729 - 17915
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||  |||| || |||| ||||||||| ||||||||    
T  17729 cataacgggcgactaaaacatgataccacaatccttctctatccactaacatccaccaacaccatttccctagcaatgcaacattaaactccttcaactt 17828  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||| |||||||||||||||  |||||||||| |||| |   |||||||| | || |||||||||||  || |||||||| |||||||    
T  17829 cctgacccccaaccctccaaactcctttttagaacatacagtattccaatctattcaagtaattttcctacggtcctcaatcccccc 17915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 35122262 - 35122076
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| ||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||  ||||||| |||| ||||||||   ||||| |    
T  35122262 cataacgggcgactaaaacctgataccacaatccttctctatccactaacatcctccaacaccatttccctagtaatgcaacattaaacttcctcaacct 35122163  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    |||||||||||||||||||  |||||||||| |||| |   |||||||| | |||||||||||||   || ||||||||||||||||    
T  35122162 cctaacccccaaccctccagactcctttttagaacatacagtattccaatctatccaagtaatttacctacggtcctcactcccccc 35122076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 6866948 - 6867131
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| ||||||||||||| ||||||||||  |||||||||  ||||||||||||| |||||||||  ||||||| | || |||||| || ||||||||    
T  6866948 cataacgggcgactaaaacatgataccacaactcttctctataaactaacatcctccgacaccatttacctagtaaaggaacattaaattccttcaactt 6867047  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    ||| |||||||| ||| |||||||||||||| ||||||   |||||||||| ||||||||||||||| ||   |||||||||||    
T  6867048 ccttacccccaaacctacatgctcctttttagaacacaatgtattccaacctatccaagtaatttttctacaatcctcactccc 6867131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 30509608 - 30509417
Alignment:
Q  8 ctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttc 107  Q
    |||| |||||| ||||||||||||  |||||||||| || |||||||| ||||||| |||||||||||||||  |||| || || | |||||| || |||    
T  30509608 ctcgccataacgggcgactaaaacctgataccacaagccatctctatctactaacaacctccaacaccatttccctagcaaagctacattaaattccttc 30509509  T
Q  108 aacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    |||||||||||||||||||||||   |||||||||| |||| |   |||||||| | ||||||||||||||  || ||||||||||||||||    
T  30509508 aacttcctaacccccaaccctcctaactcctttttagaacaaacagtattccaatctatccaagtaattttcctacggtcctcactcccccc 30509417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 30549948 - 30549757
Alignment:
Q  8 ctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttc 107  Q
    |||| |||||| ||||||||||||  |||||||||| || |||||||| ||||||| |||||||||||||||  |||| || || | |||||| || |||    
T  30549948 ctcgccataacgggcgactaaaacctgataccacaagccatctctatctactaacaacctccaacaccatttccctagcaaagctacattaaattccttc 30549849  T
Q  108 aacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    |||||||||||||||||||||||   |||||||||| |||| |   |||||||| | ||||||||||||||  || ||||||||||||||||    
T  30549848 aacttcctaacccccaaccctcctaactcctttttagaacaaacagtattccaatctatccaagtaattttcctacggtcctcactcccccc 30549757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 38358051 - 38358234
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| |||||||||||   ||||||||||  |||||||||| |||||||||||||||||||||||  ||||||| |||||||||||||| |||||  |    
T  38358051 cataacgggcgactaaaatctgataccacaactcttctctatcaactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatct 38358150  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    |||||||||||| ||||||  |||||||||| |||| |    || |||||| ||||||||||||||| ||   |||||||||||    
T  38358151 cctaacccccaaacctccaaactcctttttagaacataaagaatcccaacctatccaagtaatttttctacaatcctcactccc 38358234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 22094813 - 22094678
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| ||||||  ||||||||||| | |||||| |||||  | |||||||||||||||||||||||||| ||  ||||||| |||||||||||||| |    
T  22094813 acctcgccataacgagcgactaaaactctataccaaaaaccacccctatccactaacatcctccaacaccacttccctagtaaagcaatattaaactcct 22094714  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttt 141  Q
    ||||||  |||||||| |||||||||  ||||||||    
T  22094713 tcaactgtctaacccctaaccctccaaactcctttt 22094678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 380507 - 380611
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| ||||| ||||||||||| ||||||| ||||||||||||  |||||||| || ||||||||||  |||||| ||| |||||||| ||||||| |    
T  380507 ataccagaaaccatctctatccaccaacatccgccaacaccatttgcctagtaagacactattaaactccctcaactgcctgacccccaaacctccatac 380606  T
Q  135 tcctt 139  Q
    |||||    
T  380607 tcctt 380611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 31864386 - 31864550
Alignment:
Q  26 taaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaac 125  Q
    |||||||| |||||| || ||| |||||||||||||||||||||||||||||||  | |  |   ||||||||||||| ||||| |  |  |||| || |    
T  31864386 taaaacactataccataagcctcctctatccactaacatcctccaacaccatttacccaacataacaatattaaactccttcaattgtcccaccctcagc 31864485  T
Q  126 cctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctc 190  Q
    ||||||| | |||||||  ||||||   |||||||||| ||||||||||||||| |||| |||||    
T  31864486 cctccatacacctttttttaacacacagtattccaacctatccaagtaatttttctatgttcctc 31864550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 31864831 - 31864989
Alignment:
Q  26 taaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaac 125  Q
    |||||| | |||||| || ||| |||||||||||||||||||||||||||||||  |||  |    |||||||||||| ||||| |  |  |||| || |    
T  31864831 taaaaccctataccataagcctcctctatccactaacatcctccaacaccatttacctaacataataatattaaactccttcaattgtcccaccctcagc 31864930  T
Q  126 cctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatg 184  Q
    ||||||| | |||||||  |||||| | |||||||||| || |||||||||||| ||||    
T  31864931 cctccatacacctttttttaacacacggtattccaacctattcaagtaatttttgtatg 31864989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 19513028 - 19512955
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccattt 79  Q
    |||||| |||||| |||||| | ||||| ||||||||||||| || |||| || ||||||||||||||||||||    
T  19513028 acctcgccataacgggcgacaagaacactataccacaaacctactttatcgaccaacatcctccaacaccattt 19512955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 33170267 - 33170368
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||| || ||||| || ||||||| |||||||||||||||| |||  || ||||||||||||||  ||||  ||||||| |||| |||||||| ||||    
T  33170267 ccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccctcaaactcctaacacccatccctccatactcc 33170366  T
Q  138 tt 139  Q
    ||    
T  33170367 tt 33170368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 8299713 - 8299614
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||||||| | ||||| ||||||| |||||||||||||||  | |  || ||||| |||||||||  |||| ||||||| ||||||||||||| ||||    
T  8299713 ccacaaacctcccctatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctaacacccaaccctccatactcc 8299614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 35983306 - 35983221
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| || |||||||||||| || |  || || | |||||||||||||||| || |||||||||||||||||| ||||||    
T  35983306 tccaataacaaccgccaacaccatttatccaacaaagctaaattaaactctttcaacctcgtaacccccaaccctccatactcctt 35983221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 26262410 - 26262342
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactc 103  Q
    |||||| |||||| ||||||  |||||||||||||||||||||||| |||  || ||| ||||||||||    
T  26262410 ataccaaaaacctactctatttactaacatcctccaacaccattttcctaacaaagcagtattaaactc 26262342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 10780810 - 10780909
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||||||| | ||||| ||||||| || ||||||||||||  | |  || ||||| ||||||||| ||||| |||| || ||||||||||||| ||||    
T  10780810 ccacaaacctcccctatcaactaacagccgccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctcacacccaaccctccatactcc 10780909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 25856970 - 25856871
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||||||| | ||||| ||||||| |||| ||||||||||  | |  || ||||| |||||||||  |||| ||||||| ||||||||||||| ||||    
T  25856970 ccacaaacctcccctatcaactaacagcctctaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctaacacccaaccctccatactcc 25856871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 27165494 - 27165395
Alignment:
Q  40 acaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| ||||| ||||||| || ||||||||||||  | || || ||||| ||||||| | ||||| ||||||| |||| |||||||| ||||||    
T  27165494 acaacccttccctatctactaacaaccgccaacaccatttccccagcaatgcaatgttaaactttctcaacctcctaacacccatccctccatactcctt 27165395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 27116688 - 27116603
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| |||||||||||||||  | |  || ||||| ||||||||  ||||| || |||||||||||||||||| ||||||    
T  27116688 tccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 27116603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 42928792 - 42928841
Alignment:
Q  90 gcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    ||||||||||||||| ||||| ||||||| |||| |||||||| ||||||    
T  42928792 gcaatattaaactctctcaacctcctaacacccatccctccatactcctt 42928841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 22437822 - 22437866
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccattt 79  Q
    |||||||||||| |||||||| |||||||||||||| | ||||||    
T  22437822 ataccacaaaccatctctatctactaacatcctccagccccattt 22437866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 140
Target Start/End: Original strand, 35637742 - 35637845
Alignment:
Q  36 taccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgct 135  Q
    ||||| |||||| ||||||| || |||| |||||||||||| ||| ||| ||| |||| ||| |||||  |||| | ||| | |||||| ||||||||||    
T  35637742 taccataaacctcctctatcaaccaacaacctccaacaccactttcctaataatgcaaaatttaactccctcaattgcctca-ccccaaacctccatgct 35637840  T
Q  136 ccttt 140  Q
    |||||    
T  35637841 ccttt 35637845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 23065602 - 23065444
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| ||||||||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||  |||||||  ||| ||||||||| ||||||||    
T  23065602 cataacgggcgactaaaacatgataccacaaaccttctctatcaactaacaacctctaacaccatttacctagtaaatcaacattaaactccttcaactt 23065503  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaag 171  Q
     |||||||| || |||||||||||| ||||| |||||| | |||||||||| |||||||    
T  23065502 tctaaccccgaaacctccatgctccattttagaacacacggtattccaacctatccaag 23065444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 21549432 - 21549614
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaactt 112  Q
    |||||| |||||||||||   |||| ||||| |||| |||||| |||||||||||||||||||||||  ||||||| |||||||||||||| |||||  |    
T  21549432 cataacgggcgactaaaatctgatatcacaacccttatctatcaactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatct 21549531  T
Q  113 cctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    ||| |||||||| |||||||||||||||||| ||||||   ||| |||||| |||||||| |||||| ||  ||||||||||||    
T  21549532 cctcacccccaaacctccatgctcctttttagaacacaatgtatcccaacctatccaagt-atttttctacagtcctcactccc 21549614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 33805371 - 33805482
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||  |||| || |||| ||||||||| ||||||||||| |||    
T  33805371 ggcgactaaaacatgataccacaatccttctctatccactaacatcctccaacaccatttccctagcaatgcaacattaaactccttcaacttcctgacc 33805470  T
Q  120 cccaaccctcca 131  Q
    ||||||||||||    
T  33805471 cccaaccctcca 33805482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 13086116 - 13086250
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||||| ||||| ||||||||||||| ||||||| || ||||||||||||||||||||  |||  || |||| ||||||||| |    
T  13086116 acctcgccataacgggcgactagaacactataccacaaacctactctatctaccaacatcctccaacaccatttacctaacaaagcaacattaaactcct 13086215  T
Q  106 tcaacttcctaacccccaaccctccatgctccttt 140  Q
    ||||||||||||||||||||||||||  |||||||    
T  13086216 tcaacttcctaacccccaaccctccagcctccttt 13086250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 503096 - 502960
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    ||||||| |||||| |||||||||||| | ||| || |||||  | |||||||||||||||||||||||||||||  ||||||||||||||||||||||     
T  503096 cacctcgccataacgggcgactaaaactctatatcaaaaaccacccctatccactaacatcctccaacaccatttccctagtaaggcaatattaaactcc 502997  T
Q  105 ttcaacttcctaacccccaaccctccatgctcctttt 141  Q
    |||||||  |||||||| |||||||||  ||||||||    
T  502996 ttcaactgtctaacccctaaccctccaaactcctttt 502960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 33640493 - 33640619
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    ||||||| |||||| |||||||||||| | |||||| |||||  | |||||||||||||||||||||||||||||  |||||||||||| |||||||||     
T  33640493 cacctcgccataacgggcgactaaaactctataccaaaaaccacccctatccactaacatcctccaacaccatttccctagtaaggcaacattaaactcc 33640592  T
Q  105 ttcaacttcctaacccccaaccctcca 131  Q
    |||||||  |||||||| |||||||||    
T  33640593 ttcaactgtctaacccctaaccctcca 33640619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 11469159 - 11469331
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    ||||||||| |||||||||||||| |||||| |||| || ||||||||||||||||||||  |||| || || |||||||||||||||||||||||||||    
T  11469159 ggcgactaacacacgataccacaacccttctttatctaccaacatcctccaacaccatttacctagcaatgctatattaaactctttcaacttcctaacc 11469258  T
Q  120 cccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcac 192  Q
     |||  ||||||  |||||||    |||| |  ||||| ||||||||| ||||||||||  |||| |||||||    
T  11469259 gccagacctccaaactcctttgacgaacaaacaatatttcaaccaatctaagtaattttcctatgatcctcac 11469331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 4478575 - 4478647
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctag 85  Q
    |||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  4478575 cataacgggcgactaaaacatgataccacaacccttccctatccactaacatcctccaacaccatttttctag 4478647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 19256216 - 19256322
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    ||||||| |||||| |||||||||||| | |||||| |||||  | |||||||||||||||||||||||||||||  ||||||| |||| |||||||||     
T  19256216 cacctcgccataacgggcgactaaaactctataccaaaaaccacccctatccactaacatcctccaacaccatttccctagtaatgcaacattaaactcc 19256315  T
Q  105 ttcaact 111  Q
    |||||||    
T  19256316 ttcaact 19256322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 15674420 - 15674542
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    |||||||||||| | |||||||||||| ||||  ||||| ||||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||  |||    
T  15674420 ggcgactaaaaccctataccacaaaccatctcggtccaccaacatccgccaacaccattttcctaacaaagctaaattaaactccttcaatttccgcacc 15674519  T
Q  120 cccaaccctccatgctccttttt 142  Q
    ||||| || |||| |||||||||    
T  15674520 cccaaaccgccatactccttttt 15674542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 23347016 - 23346894
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    |||||||||||| | ||||||||||||  |||||||||| | ||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||  |||    
T  23347016 ggcgactaaaaccctataccacaaaccacctctatccaccagcatccgccaacaccattttcctaacaaagctaaattaaactccttcaatttccgcacc 23346917  T
Q  120 cccaaccctccatgctccttttt 142  Q
    ||||| || | || |||||||||    
T  23346916 cccaaaccgcgatactccttttt 23346894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 17605865 - 17605766
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||||||| | ||||| ||||||| || ||||||||||||  | |  || ||||| ||||||||| ||||| ||||||| ||||||||||||| ||||    
T  17605865 ccacaaacctcccctatcaactaacagccaccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 17605766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 24766945 - 24766844
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    ||||||| |||| ||||| | ||||| || ||||||||||||  |||  || |||| |||||||||| | ||| || |||||||||||||||||| ||||    
T  24766945 ccacaaagcttccctatctagtaacaaccgccaacaccatttacctaacaaagcaacattaaactctcttaacctcgtaacccccaaccctccatactcc 24766846  T
Q  138 tt 139  Q
    ||    
T  24766845 tt 24766844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 24573724 - 24573763
Alignment:
Q  37 accacaaaccttctctatccactaacatcctccaacacca 76  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  24573724 accacaaaccatctctatccactaccatcctccaacacca 24573763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 17577249 - 17577148
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcc--taacccccaaccctccatgct 135  Q
    |||||||||| | ||||| ||||||| |||||||||||||||  | |  || ||||| |||||||||  |||| |||  |||| ||||||||||||||||    
T  17577249 ccacaaacctcccctatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctataacacccaaccctccatgct 17577150  T
Q  136 cc 137  Q
    ||    
T  17577149 cc 17577148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 649629 - 649532
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaac 110  Q
    |||||| ||||||||| || |||||||| |||||    ||||| |||| ||||||||||||||| ||| ||| ||| || | |||||| |||||||||    
T  649629 cataacgggcgactaagactcgataccaaaaaccactcctatcaactagcatcctccaacaccactttcctaataaagccaaattaaattctttcaac 649532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 14372515 - 14372418
Alignment:
Q  45 ccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctccttttt 142  Q
    ||||| || ||||||||||  | || |||||||||| |||  ||||| | |||||||||| | ||| | ||||| ||||||||||||| |||||||||    
T  14372515 ccttccctctccactaacaaacgcctacaccattttcctaacaaggctaaattaaactctcttaaccttctaacacccaaccctccatactccttttt 14372418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 17078746 - 17078649
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaac 110  Q
    |||||| ||||||||| || |||||||| |||||    ||||| |||| ||||||||||||||| ||| ||| ||| || | |||||| |||||||||    
T  17078746 cataacgggcgactaagactcgataccaaaaaccactcctatcaactagcatcctccaacaccactttcctaataaagccaaattaaattctttcaac 17078649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 25350828 - 25350933
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| || || ||||||||||| |||||||||||| |||||||| ||| ||| |||  |||||| || || || ||||| || ||||| ||||||  |    
T  25350828 ataccagaacccatctctatccaccaacatcctccaaaaccattttcctaataaagcacaattaaattcctttaatttcctcacacccaatcctccaaac 25350927  T
Q  135 tccttt 140  Q
    ||||||    
T  25350928 tccttt 25350933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 31292600 - 31292551
Alignment:
Q  30 acacgataccacaaaccttctctatccactaacatcctccaacaccattt 79  Q
    |||||||||||||| || ||  |||| |||||||||||||||||||||||    
T  31292600 acacgataccacaacccctccatatctactaacatcctccaacaccattt 31292551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 13938332 - 13938428
Alignment:
Q  43 aaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| || ||||||| ||||||||||||||||  ||  || ||||| ||||||||| ||||  ||||||| |||| |||||| | ||||||    
T  13938332 aaccatctctctctactaacaacctccaacaccattttcttaacaaagcaatgttaaactctctcaatctcctaacacccatccctccgtactcctt 13938428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 20882545 - 20882465
Alignment:
Q  57 actaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    ||||||| || |||||||||||| || |  || ||||| ||||||||| ||||| ||||||| |||| |||||||| ||||    
T  20882545 actaacaaccgccaacaccatttctccaacaaagcaatgttaaactctctcaacctcctaacacccatccctccatactcc 20882465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 34853197 - 34853022
Alignment:
Q  20 ggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacc 119  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||   |||  |||||||  ||| |||||||||||||| |||||| |||    
T  34853197 ggcgactaaaacatgataccacaaaccttctctatcaactaacatcctccaacaatgtttacctagtaaatcaacattaaactctttcagcttccttacc 34853098  T
Q  120 cccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactccc 196  Q
    | ||| |||||||||| |||| || |||||| | |||||||||| ||||| ||||||||| ||   |||||||||||    
T  34853097 ctcaaacctccatgct-ctttctagaacacaaggtattccaacctatccatgtaatttttctacaatcctcactccc 34853022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 25504558 - 25504432
Alignment:
Q  5 cacctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactct 104  Q
    ||||||| |||||| |||||||||||| | |||||| |||||  | |||||||||||||||||||||||||||||  ||||||||||||||||||||||     
T  25504558 cacctcgccataacgggcgactaaaactctataccaaaaaccacccctatccactaacatcctccaacaccatttccctagtaaggcaatattaaactcc 25504459  T
Q  105 ttcaacttcctaacccccaaccctcca 131  Q
     ||||||  |||||||| |||||||||    
T  25504458 atcaactgtctaacccctaaccctcca 25504432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 20796234 - 20796427
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||||| ||||  ||||||||| ||| ||||||  || ||||||||||||||||||||  |||  || |||| |||||||||      
T  20796234 acctcgccataacgggcgactagaacattataccacaaccctactctatttaccaacatcctccaacaccatttacctaacaaagcaaaattaaactccc 20796333  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||||| ||||||||||||| ||||||  |||||||  | ||||||   |||||||||| ||||||||||||||   ||||||||| | ||||||    
T  20796334 tcaacctcctaacccccaatcctccagactcctttggagaacacaaagtattccaacctatccaagtaattttccgatggtcctcccccccccc 20796427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 39430854 - 39431047
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||||| ||||| ||||||||| ||| ||||||| || ||||||||||||||||| ||  |||  || |||  |||||||||      
T  39430854 acctcgccataacgggcgactagaacactataccacaaccctactctatctaccaacatcctccaacaccacttacctaacaaagcacaattaaactccc 39430953  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||||| |||||||||| |||||||||  |||||||  | ||||||   |||||||| | ||||||||||||||   | ||||||||||||||||    
T  39430954 tcaacctcctaacccctaaccctccagactcctttggagaacacaaagtattccaatctatccaagtaattttccgacggtcctcactcccccc 39431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 49264527 - 49264334
Alignment:
Q  6 acctcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctt 105  Q
    |||||| |||||| |||||||| ||||| | ||||||| ||| ||||||| || |||||| |||||||||||||  |||  ||  |||  ||||||||      
T  49264527 acctcgccataacgggcgactataacactacaccacaaccctactctatctaccaacatcttccaacaccatttacctaacaaaacaaagttaaactccc 49264428  T
Q  106 tcaacttcctaacccccaaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    ||||| ||||||||||||||||||||  |||||||  | ||||||   |||||||||| ||||||||||||||   | ||||||||||||||||    
T  49264427 tcaacctcctaacccccaaccctccagactcctttggagaacacaaagtattccaacctatccaagtaattttccgacggtcctcactcccccc 49264334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 32352858 - 32352737
Alignment:
Q  21 gcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccc 120  Q
    ||||||||||| | ||||||||||||  |||||||||| ||||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||| ||||    
T  32352858 gcgactaaaaccctataccacaaaccacctctatccaccaacatccgccaacaccattttcctaacaaagctaaattaaactccttcaatttcctcaccc 32352759  T
Q  121 ccaaccctccatgctccttttt 142  Q
    |||| || |||| |||||||||    
T  32352758 ccaaaccgccatactccttttt 32352737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 40563092 - 40562986
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    ||||||||| || ||||||||||| ||||||||||||||| | ||  |||  ||||||||||| || || ||||||| ||| ||||| |||||||||| |    
T  40563092 ataccacaacccgtctctatccaccaacatcctccaacacaacttgcctaacaaggcaatattgaattccttcaactacctcacccctaaccctccatcc 40562993  T
Q  135 tcctttt 141  Q
    |||||||    
T  40562992 tcctttt 40562986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 48072978 - 48072886
Alignment:
Q  22 cgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcc 114  Q
    |||||||||| ||||||||||||||  |||||||||| ||||||| ||||||||||||| |||  || || | ||||||||| ||||| ||||    
T  48072978 cgactaaaacccgataccacaaaccacctctatccaccaacatccgccaacaccattttcctaacaaagctaaattaaactccttcaatttcc 48072886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 13112831 - 13112717
Alignment:
Q  26 taaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaac 125  Q
    ||||||||| |||||||| || ||| | ||||| ||||||||||||||||||||  | |  || | || |||||||||| | ||| ||||||||||||||    
T  13112831 taaaacacggtaccacaacccctctttgtccaccaacatcctccaacaccatttccccaacaaagaaaaattaaactctcttaacctcctaacccccaac 13112732  T
Q  126 cctccatgctccttt 140  Q
    || |||| |||||||    
T  13112731 cccccatcctccttt 13112717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 45795881 - 45795985
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| |||||  || ||||||| ||||||| ||||||||||||  |||  || ||| ||||||| || | ||||||||| |||||||||||||||| |    
T  45795881 ataccataaaccacctttatccaccaacatccgccaacaccatttacctaacaaagcactattaaattcctgcaacttcctcacccccaaccctccatac 45795980  T
Q  135 tcctt 139  Q
    |||||    
T  45795981 tcctt 45795985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 27393483 - 27393377
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgc 134  Q
    |||||| |||||| ||||||| || |||| |||||||||||| ||| |||  || |||| |||||||||   ||||||||| |||||||| || | ||||    
T  27393483 ataccataaacctcctctatcaaccaacaacctccaacaccactttcctaacaatgcaagattaaactcccgcaacttcctcacccccaaaccacaatgc 27393384  T
Q  135 tcctttt 141  Q
    |||||||    
T  27393383 tcctttt 27393377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 6051228 - 6051313
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| |||||||||||||||  | |  || ||||| |||||||| |||||| || |||||||||||||||||| ||||||    
T  6051228 tccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccttcaacctcttaacccccaaccctccatactcctt 6051313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 13867367 - 13867270
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccat 132  Q
    |||||| |||||  |||||||||| ||||||| ||||||||||||  |||  || ||| ||||||| || | ||||||||| |||||||| |||||||    
T  13867367 ataccataaaccacctctatccaccaacatccgccaacaccatttacctaacaaagcactattaaattcctgcaacttcctcacccccaaacctccat 13867270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 43944012 - 43943971
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacacca 76  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  43944012 ataccacaaaccatctctatcaactaacatcctccaacacca 43943971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 33142747 - 33142703
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccattt 79  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||    
T  33142747 ataccacaagccttctctatcaactaacaacctccaacaccattt 33142703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 20987771 - 20987849
Alignment:
Q  45 ccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||||||||||| ||||||||||| ||||||||  |||  || ||| ||||||| ||  |||||| |||||||||||    
T  20987771 ccttctctatccaccaacatcctccagcaccatttccctaacaacgcagtattaaattccctcaactgcctaaccccca 20987849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 10710753 - 10710656
Alignment:
Q  13 cataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaac 110  Q
    |||||| ||||||||| || |||||||| |||||    ||||| |||| |||||||||||||||  || ||| |||||| | |||||| |||||||||    
T  10710753 cataacgggcgactaagactcgataccaaaaaccactcctatcaactagcatcctccaacaccacattcctaataaggctaaattaaattctttcaac 10710656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 52692077 - 52692122
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttt 80  Q
    |||||| || || ||||||||||| |||||||||||||||||||||    
T  52692077 ataccagaacccctctctatccaccaacatcctccaacaccatttt 52692122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 33142628 - 33142584
Alignment:
Q  155 attccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    |||||||| |||||||||||||||  |||| ||||||||||||||    
T  33142628 attccaactaatccaagtaattttcctatgatcctcactcccccc 33142584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 38070438 - 38070514
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaact 111  Q
    ||||||||| ||| |||||||||| |||| || |||||||||||||  || |||  |||||||||| || |||||||    
T  38070438 ataccacaaccctcctctatccaccaacaaccgccaacaccattttcttaataaaacaatattaaattcattcaact 38070514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 15197 - 15029
Alignment:
Q  23 gactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccc 122  Q
    |||||||||| | |||||||||||||||||||| |||          ||||||||||  ||||||| ||||||||||| || ||||||||||||||||||    
T  15197 gactaaaacatggtaccacaaaccttctctatcgact----------aacaccatttacctagtaaagcaatattaaaatccttcaacttcctaaccccc 15108  T
Q  123 aaccctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccctc 201  Q
    ||  ||||||||||||||||| |||||| | |||||||||| ||||||||||||||| ||   ||||||||||| ||||    
T  15107 aaaactccatgctcctttttagaacacaaggtattccaacctatccaagtaatttttctacaatcctcactcccacctc 15029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 4101 - 3926
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||||| | |||||||||||| ||||||||||| ||||||| ||||||||||||  |||  |  ||| |||||||||| |||||||  || |||||||    
T  4101 actaaaaccctataccacaaaccatctctatccaccaacatccgccaacaccatttccctaacagagcactattaaactccttcaactgtctcaccccca 4002  T
Q  124 accctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    | ||||||| |||||||||  |||| ||  | ||||| || |||||  |||||||  |||| ||||||||||||||    
T  4001 aacctccatactccttttttgaacaaatagttttccatcctatccagctaattttcctatgatcctcactcccccc 3926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 327680 - 327505
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||||| | |||||||||||| ||||||||||| ||||||| ||||||||||||  |||  || ||| |||||||||| |||||||  || |||||||    
T  327680 actaaaaccctataccacaaaccatctctatccaccaacatccgccaacaccatttccctaacaaagcactattaaactccttcaactgtctcaccccca 327581  T
Q  124 accctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    | ||||||| ||||||| |  |||| ||  | ||||| || |||||  |||||||  |||| ||||||||||||||    
T  327580 aacctccatactcctttctggaacaaatagttttccatcctatccagctaattttcctatgatcctcactcccccc 327505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 312226 - 312051
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||||| | |||||||||||| ||||||||||| ||||||| ||||||||||||  |||  || ||| |||||||||| |||||||  || |||||||    
T  312226 actaaaaccctataccacaaaccatctctatccaccaacatccgccaacaccatttccctaacaaagcactattaaactccttcaactgtctcaccccca 312127  T
Q  124 accctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    | ||||| | ||||||| |  |||| ||  | ||||| || |||||  |||||||  |||| ||||||||||||||    
T  312126 aacctccgtactcctttctggaacaaatagttttccatcctatccagctaattttcctatgatcctcactcccccc 312051  T

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Target: scaffold0029 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 134399 - 134224
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    |||||||| | |||||||||||| ||||||||||| ||||||| ||||||||||||  |||  || ||| |||||||||| |||||||  || |||||||    
T  134399 actaaaaccctataccacaaaccatctctatccaccaacatccgccaacaccatttccctaacaaagcactattaaactccttcaactgtctcaccccca 134300  T
Q  124 accctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcactcccccc 199  Q
    | ||||| | ||||||| |  |||| ||  | ||||| || |||||  |||||||  |||| ||||||||||||||    
T  134299 aacctccgtactcctttctggaacaaatagttttccatcctatccagctaattttcctatgatcctcactcccccc 134224  T

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Target: scaffold1350 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 153 - 294
Alignment:
Q  38 ccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcc 137  Q
    |||||| || |||||||| ||||||| |||||||||||||||  |||  || ||||| ||||||||| ||||| ||||||| ||||||||||||| ||||    
T  153 ccacaatccatctctatctactaacaacctccaacaccatttccctaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 252  T
Q  138 tttttacaacacatgatattccaaccaatccaagtaattttt 179  Q
     |  |  ||||||    ||||||||||||||||| |||||||    
T  253 ctcctcaaacacaaagaattccaaccaatccaagaaattttt 294  T

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Target: scaffold0418 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 8199 - 8367
Alignment:
Q  24 actaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaaccccca 123  Q
    ||||| |||| ||||||||||||  |||| ||||| ||||||| ||||||||||||  |||  || ||| ||||||| || |||||||  || |||||||    
T  8199 actaagacactataccacaaaccacctctgtccaccaacatccgccaacaccatttacctaacaaagcactattaaattccttcaactgtctcaccccca 8298  T
Q  124 accctccatgctcctttttacaacacatgatattccaaccaatccaagtaatttttatatggtcctcac 192  Q
    | ||||||| ||||||| |  |||| |  || ||||| || ||||||||||||||| |||| |||||||    
T  8299 aacctccattctcctttgtggaacaaacaattttccagcctatccaagtaatttttctatgatcctcac 8367  T

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Target: scaffold0179 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 8112 - 8187
Alignment:
Q  9 tcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttcta 84  Q
    |||||||||| ||||||||| || |||||||| |||||    ||||| |||| ||||||||||||||| |||||||    
T  8112 tcgtcataacgggcgactaagactcgataccaaaaaccactcctatctactatcatcctccaacaccacttttcta 8187  T

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Target: scaffold0179; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 13046 - 13121
Alignment:
Q  9 tcgtcataacaggcgactaaaacacgataccacaaaccttctctatccactaacatcctccaacaccatttttcta 84  Q
    |||||||||| ||||||||| || |||||||| |||||    ||||| |||| ||||||||||||||| |||||||    
T  13046 tcgtcataacgggcgactaagactcgataccaaaaaccactcctatctactatcatcctccaacaccacttttcta 13121  T

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Target: scaffold0048 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 63808 - 63737
Alignment:
Q  60 aacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctcca 131  Q
    ||||||| ||||||||||||  |||| || || | |||||||||  |||||| |||||||||||||||||||    
T  63808 aacatccgccaacaccatttccctagcaaagctaaattaaactccctcaactgcctaacccccaaccctcca 63737  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 3086 - 3008
Alignment:
Q  62 catcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctccttt 140  Q
    ||||||||||||||||||  ||| ||| | || ||||||  || |||||| |||||||||||||||||| | |||||||    
T  3086 catcctccaacaccatttacctaataaagaaaaattaaaagctctcaactgcctaacccccaaccctccgtcctccttt 3008  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 36110 - 36155
Alignment:
Q  35 ataccacaaaccttctctatccactaacatcctccaacaccatttt 80  Q
    |||||||||||| | |||||| |||| |||||||||||||||||||    
T  36110 ataccacaaaccatttctatctactatcatcctccaacaccatttt 36155  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 105358 - 105273
Alignment:
Q  54 tccactaacatcctccaacaccatttttctagtaaggcaatattaaactctttcaacttcctaacccccaaccctccatgctcctt 139  Q
    |||| ||||| |||||||||||||||  | |  || ||||| ||||||||  ||||| || |||||||||||||||||| ||||||    
T  105358 tccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 105273  T

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