View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21508_low_3 (Length: 515)

Name: NF21508_low_3
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21508_low_3
NF21508_low_3
[»] chr4 (22 HSPs)
chr4 (1-498)||(7765392-7765889)
chr4 (1-498)||(7786214-7786711)
chr4 (1-161)||(7771175-7771335)
chr4 (3-162)||(7789862-7790021)
chr4 (1-196)||(7877491-7877689)
chr4 (1-162)||(7773972-7774136)
chr4 (74-162)||(7237866-7237954)
chr4 (1-159)||(7908099-7908260)
chr4 (310-370)||(37826938-37826998)
chr4 (310-370)||(49048517-49048577)
chr4 (399-494)||(7908485-7908580)
chr4 (311-377)||(45372006-45372072)
chr4 (413-494)||(7773643-7773724)
chr4 (214-270)||(7813467-7813523)
chr4 (214-270)||(7822956-7823012)
chr4 (1-159)||(7800408-7800566)
chr4 (310-372)||(7800693-7800755)
chr4 (1-159)||(7822740-7822898)
chr4 (217-255)||(37827035-37827073)
chr4 (419-493)||(48863421-48863495)
chr4 (411-451)||(48852847-48852887)
chr4 (462-494)||(48898954-48898986)
[»] chr5 (3 HSPs)
chr5 (1-120)||(1811766-1811885)
chr5 (11-120)||(1812200-1812309)
chr5 (411-451)||(179218-179258)
[»] chr8 (2 HSPs)
chr8 (216-274)||(12200299-12200357)
chr8 (216-274)||(12444727-12444785)
[»] chr3 (2 HSPs)
chr3 (413-494)||(11015300-11015381)
chr3 (411-494)||(11005737-11005820)
[»] chr6 (1 HSPs)
chr6 (409-451)||(21015988-21016030)


Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 7765392 - 7765889
Alignment:
Q  1 tcgatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaaggg 100  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7765392 tcgatcaattgattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaattaaaggg 7765491  T
Q  101 tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccacccgatcgaaaagacaaatacttatgtctgcttttaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7765492 tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccaccggatcgaaaagacaaatacttatgtctgcttttaata 7765591  T
Q  201 ctaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctcagttgg 300  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7765592 ccaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctccgttgg 7765691  T
Q  301 tgttcctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattatagagaagga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765692 tgttcctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattatagagaagga 7765791  T
Q  401 gaaggagtggtttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatatt 498  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765792 gaaggggtggtttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatatt 7765889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 7786214 - 7786711
Alignment:
Q  1 tcgatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaaggg 100  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7786214 tcgatcaattgattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaattaaaggg 7786313  T
Q  101 tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccacccgatcgaaaagacaaatacttatgtctgcttttaata 200  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7786314 tcatgtagaggttttatatttatgtatcgtcatccaaacatttacatatggaatccatccaccggatcgaaaagacaaatacttatgtctgcttttaata 7786413  T
Q  201 ctaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattctcagttgg 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7786414 ccaaagcgtatattaatctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtccaataaagttaatccattcttagttgg 7786513  T
Q  301 tgttcctcaatcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttgtggcgacgattatagagaagga 400  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  7786514 tgttcctcaatcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttaccttatggcgacaattatagagaagga 7786613  T
Q  401 gaaggagtggtttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatatt 498  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7786614 gaaggggtggtttttaatggggctattcattggttgtcttcgcgtcgtgatatagctttggatgtcattgttggctttgatttaacggaaaggatatt 7786711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7771175 - 7771335
Alignment:
Q  1 tcgatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaaggg 100  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||||   ||| |||| | ||| |||||||| |||||||||||  ||||||| | |||     
T  7771175 tcgatctatagattttgaagcatttcttaacgatgatcctgcttcagtgaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggt 7771274  T
Q  101 tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatcca 161  Q
    || |||||||| |||||| || ||||||| | |||||||||  || | |||||||||||||    
T  7771275 tcgtgtagagggtttatacttttgtaccgacctccaaacatccacttatggaatccatcca 7771335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 7789862 - 7790021
Alignment:
Q  3 gatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaagggtc 102  Q
    |||| ||||||||||| |||||||||||||||| ||||||||||   ||| |||| | ||| |||||||| |||||||||||  || |||| | ||| ||    
T  7789862 gatctatagattttgaagcatttcttaacgatgatcctgcttcagtgaaccttaatttttcgcttccagaatcttattttcctgtttaaattagaggttc 7789961  T
Q  103 atgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccac 162  Q
     |||||||| |||||| || ||||||| | |||||||||  || | ||||||||||||||    
T  7789962 gtgtagagggtttatacttttgtaccgacctccaaacatccacttatggaatccatccac 7790021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 7877491 - 7877689
Alignment:
Q  1 tcgatccatagattttgatgcatttcttaacgatgct---cctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaa 97  Q
    |||||| |||| |||||| |||||||||||||||| |   ||||||||||  ||| |||| | ||| ||||  |   ||||||||||  ||||||| | |    
T  7877491 tcgatcaataggttttgaagcatttcttaacgatgatgatcctgcttcactgaacattaatttttcacttcgtggaccttattttccggttgaaattaga 7877590  T
Q  98 gggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccacccgatcgaaaagacaaatacttatgtctgctttt 196  Q
    || ||||| ||||| |||||| || ||||| ||||||||| ||| ||||| ||||||||||||||  |||  |||| |||||||| | ||||| |||||    
T  7877591 ggttcatgcagagggtttatacttttgtactgtcatccaatcatctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctcctttt 7877689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 7774136 - 7773972
Alignment:
Q  1 tcgatccatagattttgatgcatttcttaacgatgctc---ctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaa 97  Q
    |||||| |||| |||||| |||||||||||||||| |    ||||||||   ||| |||| | ||| |||||||| |||||||||||   |||||| | |    
T  7774136 tcgatctataggttttgaagcatttcttaacgatgatgatactgcttcagtgaaccttaatttttcgcttccagaatcttattttccggctgaaattaga 7774037  T
Q  98 gggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccac 162  Q
    || || |||||||| |||||| || |||| ||| | |||||||| ||||| ||||||||||||||    
T  7774036 ggttcgtgtagagggtttatacttttgtatcgtgacccaaacatctacatatggaatccatccac 7773972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 7237954 - 7237866
Alignment:
Q  74 tcttattttccctttgaaatcaaagggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatccac 162  Q
    |||||||||||  ||||||||| ||| ||||||||||| |||||| || ||||||  | ||||||||| ||| | ||||||||||||||    
T  7237954 tcttattttcctgttgaaatcagaggttcatgtagagggtttatacttttgtaccaacctccaaacatctacgtatggaatccatccac 7237866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 7908099 - 7908260
Alignment:
Q  1 tcgatccatagattttgatgcatttcttaacgatgct---cctgcttcacccaactttaactgttccctt-ccagactcttattttccctttgaaatcaa 96  Q
    |||||| ||||||||| | |||||||||||||||| |   |||||||||| |||| |||  | ||| ||| || || ||| |||||||  ||||||| |     
T  7908099 tcgatctatagattttaaagcatttcttaacgatgatgatcctgcttcactcaacattactttttcgcttacccga-tctcattttccggttgaaattag 7908197  T
Q  97 agggtcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatc 159  Q
    ||| ||||||||||| |||||| || ||||||||| |||| |||| ||||| |||||||||||    
T  7908198 aggttcatgtagagggtttatacttttgtaccgtcctccagacatctacatatggaatccatc 7908260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 37826998 - 37826938
Alignment:
Q  310 atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 370  Q
    |||||||||||||||||||||||| ||||| ||| | |||| |||||| ||||||||||||    
T  37826998 atcacatttggagtttttctcgttgaaagataattcatggagagaaattgagggtactcac 37826938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 370
Target Start/End: Complemental strand, 49048577 - 49048517
Alignment:
Q  310 atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 370  Q
    |||||||||||||||||||||||| | ||| ||||  ||||||||||| ||||||||||||    
T  49048577 atcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcac 49048517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 7908485 - 7908580
Alignment:
Q  399 gagaaggagtggtttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 494  Q
    |||||||| || | |||||||| | ||||||||||||| |||  |||| |||| ||| ||||  ||||||||||| ||||||||||| ||||||||    
T  7908485 gagaaggattgctatttaatggtgttattcattggttggctttacgtcgtgatttaggtttgactgtcattgttgcctttgatttaatggaaagga 7908580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 45372072 - 45372006
Alignment:
Q  311 tcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcacttacctt 377  Q
    |||||||||||||||||||| || | ||| |||||||||| |||| | |||||||||||||| ||||    
T  45372072 tcacatttggagtttttctcattgagagataatacttggagagaacttgagggtactcacttccctt 45372006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 494
Target Start/End: Complemental strand, 7773724 - 7773643
Alignment:
Q  413 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 494  Q
    |||||||||||||||||||||||| ||| ||||| |||| ||  || | |||| ||||||  ||||||||||| ||||||||    
T  7773724 tttaatggggctattcattggttggctttgcgtcgtgatttacgttggaatgtaattgtttcctttgatttaatggaaagga 7773643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 7813467 - 7813523
Alignment:
Q  214 taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 270  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7813467 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 7813523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 7822956 - 7823012
Alignment:
Q  214 taatctatatggttttggttacgatcagtctagagatgattatgtggtggttttatt 270  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||| ||||| ||||    
T  7822956 taatctatatggttttggttatgaccagtcaagagatgattacgtgctggttgtatt 7823012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 7800408 - 7800566
Alignment:
Q  1 tcgatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaaggg 100  Q
    |||||| |||||| |||||||||  ||||| |||| || | ||||||| ||| |||| |  |  |||||  | ||||||||||| |||||||| | ||||    
T  7800408 tcgatctatagatgttgatgcatggcttaatgatgatcttccttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattataggg 7800507  T
Q  101 tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatc 159  Q
    |||||| |||| ||| ||||| | ||||||  |||| |||| ||| | |||||||||||    
T  7800508 tcatgtggagggtttttatttttataccgttttccagacatttacctgtggaatccatc 7800566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 7800693 - 7800755
Alignment:
Q  310 atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcactt 372  Q
    ||||||||||||| |||||||||||  ||| ||||| ||||||||||| || |||||| ||||    
T  7800693 atcacatttggaggttttctcgtttccagataatacctggaaagaaattgacggtactaactt 7800755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 7822740 - 7822898
Alignment:
Q  1 tcgatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaaggg 100  Q
    |||||| |||||| |||||||||  ||||| |||| || | ||||||| ||| |||| |  |  |||||  | ||||||||||| |||||||| | ||||    
T  7822740 tcgatctatagatgttgatgcatggcttaatgatgatcttccttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattataggg 7822839  T
Q  101 tcatgtagaggttttatatttatgtaccgtcatccaaacatatacatttggaatccatc 159  Q
    |||||| |||| ||| ||||| | ||||||  |||| |||| ||| | |||||||||||    
T  7822840 tcatgtggagggtttttatttttataccgttttccagacatttacctatggaatccatc 7822898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 37827073 - 37827035
Alignment:
Q  217 tctatatggttttggttacgatcagtctagagatgatta 255  Q
    |||||||||||||||||| || |||||||||||||||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgatta 37827035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 493
Target Start/End: Original strand, 48863421 - 48863495
Alignment:
Q  419 ggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagg 493  Q
    |||||||||||||||||| |||  ||||||||||||| | |  |||| ||||||| ||||  |||||||||||||    
T  48863421 ggggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcctttcgtttaacggaaagg 48863495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 48852847 - 48852887
Alignment:
Q  411 tttttaatggggctattcattggttgtcttcgcgtcatgat 451  Q
    |||||||||||||||||||||||||| |||  |||||||||    
T  48852847 tttttaatggggctattcattggttggcttttcgtcatgat 48852887  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Original strand, 48898954 - 48898986
Alignment:
Q  462 atgtcattgttggctttgatttaacggaaagga 494  Q
    |||||||||||| ||||||||||||||||||||    
T  48898954 atgtcattgttgcctttgatttaacggaaagga 48898986  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1811885 - 1811766
Alignment:
Q  1 tcgatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaaggg 100  Q
    |||||| || ||||||||||||||||||||||||| |||||||| ||  |||||||| ||||  || ||  | |||||||||||||||||||| ||||||    
T  1811885 tcgatctatcgattttgatgcatttcttaacgatgttcctgctttacggaactttaattgtttgctccctcagtcttattttccctttgaaattaaaggg 1811786  T
Q  101 tcatgtagaggttttatatt 120  Q
    |||||| |||||||||||||    
T  1811785 tcatgttgaggttttatatt 1811766  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 1812200 - 1812309
Alignment:
Q  11 gattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaagggtcatgtagag 110  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||| ||||  |||||  | ||||||||| |||||||||| |||||||||||||||     
T  1812200 gattttgatgcatttcttaacgatgttcctgcttcactgaactttaattgtttgcttcctcagtcttatttttcctttgaaattaaagggtcatgtagat 1812299  T
Q  111 gttttatatt 120  Q
     |||||||||    
T  1812300 attttatatt 1812309  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 179218 - 179258
Alignment:
Q  411 tttttaatggggctattcattggttgtcttcgcgtcatgat 451  Q
    ||||||||||||||||||||||||| ||||  |||||||||    
T  179218 tttttaatggggctattcattggttctcttttcgtcatgat 179258  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 12200299 - 12200357
Alignment:
Q  216 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 274  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  12200299 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12200357  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 12444727 - 12444785
Alignment:
Q  216 atctatatggttttggttacgatcagtctagagatgattatgtggtggttttattgtcc 274  Q
    ||||||||||||||||||| || | ||| |||||||||||  |||||||||||||||||    
T  12444727 atctatatggttttggttatgaccggtcaagagatgattacttggtggttttattgtcc 12444785  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 494
Target Start/End: Complemental strand, 11015381 - 11015300
Alignment:
Q  413 tttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 494  Q
    ||||||||| ||||||||||||| ||||  || |||||| || |  ||||||| ||||||||||||||||||  ||||||||    
T  11015381 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaagga 11015300  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 494
Target Start/End: Complemental strand, 11005820 - 11005737
Alignment:
Q  411 tttttaatggggctattcattggttgtcttcgcgtcatgatatagctttggatgtcattgttggctttgatttaacggaaagga 494  Q
    ||||||||||| ||||||||||||| ||||  || |||||| |  |  ||||||| ||||||||||||||||||  ||||||||    
T  11005820 tttttaatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaagga 11005737  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 21015988 - 21016030
Alignment:
Q  409 ggtttttaatggggctattcattggttgtcttcgcgtcatgat 451  Q
    |||||||||||||||||||||||||||| |||  |||||||||    
T  21015988 ggtttttaatggggctattcattggttggcttttcgtcatgat 21016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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