View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_low_4 (Length: 504)
Name: NF21508_low_4
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 486
Target Start/End: Original strand, 2423392 - 2423857
Alignment:
| Q |
9 |
atgaatggtgggaaggatttcgatttaagatagtaattgtgtgatgtgatgtagtttttgataggttcaacctcaaatcaatgataaaaatcatttgaaa |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2423392 |
atgaatggtgggaaggatttcgatttaagatagtaattgtgtgatgtgatgtagtttttgataggttcaacctcaaatcaatgataaaaatcatttgaaa |
2423491 |
T |
|
| Q |
109 |
ataattcaaggtctacacttttatgaaacaacattaacttttgatgtcatacaatgacttgatgatgtcatctaatgacttgaatggtcatac-aatcac |
207 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2423492 |
ataattcaaggtttacacttttatgaaacaacattaacttttgatgtcatacaatgacttgatgatgtcatctaatgacttgaatggtcatacaaatcac |
2423591 |
T |
|
| Q |
208 |
tcaaataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattgatatttatatattcttttcctacaacaagtccataaatcttgc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2423592 |
tcaaataaaatggaaggagaaaaacaatc-------------ttgggtcaaaagttgatatttatatattcttttcctacaacaagtccataaatcttgc |
2423678 |
T |
|
| Q |
308 |
atccaatccattcccacatgtttcaattgttcattagacacatgcatgttttccttaatgctagacaaactccgtcttttttcacatatgaacaaaaacc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2423679 |
atccaatccattcccacatgtttcaattgttcattagacacatgcatgttttccttaatgctagacaaactccgtcttttttcacatatgaacaaacacc |
2423778 |
T |
|
| Q |
408 |
tttatttannnnnnnaattttacaaatcaaattcctatctataaatatttgttcaatttgttcacaatatcttcacaac |
486 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2423779 |
tttatttatttttttaattttacaaatcaaattcctatctataaatatttgttcaatttgttcgcaatatcttcacaac |
2423857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 17019163 - 17019108
Alignment:
| Q |
211 |
aataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattgat |
266 |
Q |
| |
|
||||||| |||| |||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
17019163 |
aataaaagggaaagagaaaaacaatttagaagggtgattttgggtcaaaaattgat |
17019108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 17549600 - 17549545
Alignment:
| Q |
211 |
aataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattgat |
266 |
Q |
| |
|
||||||| |||| |||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
17549600 |
aataaaagggaaagagaaaaacaatttagaagggtgattttgggtcaaaaattgat |
17549545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 3673683 - 3673628
Alignment:
| Q |
210 |
aaataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga |
265 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| ||||||| |||||||||||||| |
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|
| T |
3673683 |
aaataaaaaggaaggagaaaaacgatttagaggggtgatttggggtcaaaaattga |
3673628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 34115707 - 34115761
Alignment:
| Q |
211 |
aataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga |
265 |
Q |
| |
|
||||||| |||| ||||||||| | |||||| |||||||||||||||||||||| |
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|
| T |
34115707 |
aataaaagggaaagagaaaaacgaactagaggggtgattttgggtcaaaaattga |
34115761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 3398033 - 3398088
Alignment:
| Q |
210 |
aaataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga |
265 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||| | |||||||||||||| |
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|
| T |
3398033 |
aaataaaagggaaggagaaaaacaatgtagaggggtgatctggggtcaaaaattga |
3398088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 23732448 - 23732502
Alignment:
| Q |
211 |
aataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga |
265 |
Q |
| |
|
|||||||| ||| ||||||||| | |||||||||||||||| |||||||||||| |
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|
| T |
23732448 |
aataaaatagaaagagaaaaacgagttagagaagtgattttgagtcaaaaattga |
23732502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 13691822 - 13691867
Alignment:
| Q |
220 |
gaaggagaaaaacaatctagagaagtgattttgggtcaaaaattga |
265 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
13691822 |
gaaggagaaaaacgatttagaggggtgattttgggtcaaaaattga |
13691867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 40565209 - 40565261
Alignment:
| Q |
210 |
aaataaaatggaaggagaaaaacaatctagagaagtgattttgggtcaaaaat |
262 |
Q |
| |
|
||||| || |||||||||||||| || |||||| ||||||| ||||||||||| |
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|
| T |
40565209 |
aaatagaaaggaaggagaaaaacgatttagagaggtgatttggggtcaaaaat |
40565261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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