View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_low_5 (Length: 478)
Name: NF21508_low_5
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 3 - 328
Target Start/End: Complemental strand, 3451335 - 3451001
Alignment:
| Q |
3 |
atatgatcatggttatggaacaggatatgcaggacaattgagaagtgtgaagttttgattgaaaagggtcaatgacattttctatcatgtacaaaa---g |
99 |
Q |
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| T |
3451335 |
atatgatcatggttatggaacaggatatgcaggacaattgagaagtgtgaagttttgattgaaaaggatcaatgacattttctatcatgtacaaaattag |
3451236 |
T |
|
| Q |
100 |
caaacttcgaacttctttttcaaccgaaaagggta--------gttgcatgtgatgacaatgtgaattttgaagagcaaaacaacttagtatttgcaaac |
191 |
Q |
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| T |
3451235 |
caaacttcgaacttctttttcaaccgaaaagggtacatgtgtagttgcatgtgatgacaatgtgaattttgaagagcaaaataacttagtatttgcaaac |
3451136 |
T |
|
| Q |
192 |
cagcacttagata--acatcatagtagttatgttaggtcatatacttacataaagtaaattttagactatttatttatacccttaataaccagacgggtc |
289 |
Q |
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| T |
3451135 |
cagcacttagatataacatcatagtagttatgttaggtcatatacttacataaagtaaattttagactatttatttatacccttaataaccagacgggtc |
3451036 |
T |
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| Q |
290 |
tctatatatgcatgcatgcatgctttccctttttccttc |
328 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
3451035 |
tctatatatgcatgc----atgctttccctttttccttc |
3451001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 3450975 - 3450903
Alignment:
| Q |
368 |
ccatcaactccgaccgccttgtactaaaataaaaccaccatcctcatcccctctttctcttctataaactata |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3450975 |
ccatcaactccgaccgccttgtactaaaataaaaccaccatcctcatcccctctttctcttctataaactata |
3450903 |
T |
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