View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_low_8 (Length: 450)
Name: NF21508_low_8
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 24 - 441
Target Start/End: Original strand, 39036319 - 39036736
Alignment:
| Q |
24 |
tgagacaaacaaggtgacttgatatctttttaaagacaccaaatattggccctaaagaatcttgccaatgaatgagagtaggaggtgagattccaataaa |
123 |
Q |
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| T |
39036319 |
tgagacaaacaaggtgacttgatatctttttaaagacaccaaatattggccctaaagaatcttgccaatgaatgtcagtaggaggtgagattccaataaa |
39036418 |
T |
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| Q |
124 |
gccaataattgagaccaaaactaaagaatttgctctagtggtcctcaataatgaaagcatcccaatagttatgtgcatctccacaattacaaaggacatg |
223 |
Q |
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| T |
39036419 |
gccaataattgagaccaaaactaaagaatttgctctagtggtcctcaataatgaaagcatcccaatagttatgtacatctccacaattacaaaggacatg |
39036518 |
T |
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| Q |
224 |
ccctatgcttttaacatattgtaatatttcaaaataagatatg--nnnnnnntacatttggcataatataattggttgagatagagagacacgtagttag |
321 |
Q |
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| T |
39036519 |
ccctatgcttttaacatattgtaatatttcaaaataagatatgaaaaaaaaatacatttggcataatataattggttgagatagagagacacgtggttag |
39036618 |
T |
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| Q |
322 |
caattctnnnnnnnnnnnnnnnctaggttgtgcataaatataaaaatgatgatcaataatatatgaagaaaattgatgaagtattatctctctctctttt |
421 |
Q |
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| T |
39036619 |
caattct--aaaaaaaaaaaaactaggttgtgcataaatataaaaatgatgatcaataatgtatgaagaaaattgatgaagtattatctctctctctttt |
39036716 |
T |
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| Q |
422 |
atactttcttgtagaataat |
441 |
Q |
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| T |
39036717 |
atactttcttgtagaataat |
39036736 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 16472369 - 16472418
Alignment:
| Q |
351 |
gtgcataaatataaaaatgatgatcaata--atatatgaagaaaattgat |
398 |
Q |
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| T |
16472369 |
gtgcataaatatgaaaatgattatcaataatatatatgaagaaaattgat |
16472418 |
T |
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