View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21508_low_9 (Length: 431)
Name: NF21508_low_9
Description: NF21508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21508_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 44842457 - 44842051
Alignment:
| Q |
18 |
caaagcagaaagccaaaaaactctagtagtattcccttgaatgatatctcttaatttgagttattcttataaaatagaatgcattatactctatgaaatc |
117 |
Q |
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| T |
44842457 |
caaagcagaaagccaaaaaactctagtagtattcccttgaatgatatctcttaatttgagttattcttataaaatagaatgcattataccctatgaaatc |
44842358 |
T |
|
| Q |
118 |
aaaaatagctttgataggaacaaagacattcgtcaagtgctaccaaagaaagtgatgtacgggggatcttatcgttggtggcgacatcgcagaagttgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |
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| T |
44842357 |
aaaaatagctttgataggaacaaagacattcgtcaagtgctaccaaagaaagtgatgtcgggggga-cttatcgttggtggcgacatcacagaagttgca |
44842259 |
T |
|
| Q |
218 |
agggatgaagtattggctttgagaggaaaaaacagttatactcgttttctttgattttgaaaaaagagggagaaaggagattgacactagtatataatct |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44842258 |
agggatgaactattggctttgagaggaaaaaacagttatactcgttttctttgattttgaaaaaagagggagaaaggagattgacactagtatataatct |
44842159 |
T |
|
| Q |
318 |
cctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagtttttgggtttattagactttagataatggacatct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44842158 |
cctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagtttttgggtttattagactttagataatggacatct |
44842059 |
T |
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| Q |
418 |
cagtgtta |
425 |
Q |
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|||||||| |
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| T |
44842058 |
cagtgtta |
44842051 |
T |
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