View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21509_high_2 (Length: 455)
Name: NF21509_high_2
Description: NF21509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21509_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 23035973 - 23035635
Alignment:
| Q |
19 |
atatgagcttcataagaagaaaa-ttaagcctttagcagtttacctgtaatatttttagcagggtaccgaacagataccttcgatcggtagaaataagta |
117 |
Q |
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| T |
23035973 |
atatgagcttcataagacgaaaaattaaacctttggcagtttacctgtaatatttttagcagagtaccgaacagataccttccgtcggtagaaataagta |
23035874 |
T |
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| Q |
118 |
ggctatgtttggcaataagagttaaaagaaatgaagattgtgtaacttatccatattttctagaagccaaataaatgaagattgtgcaacttaaccgtgt |
217 |
Q |
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| T |
23035873 |
ggctatgtttggctataagagttaaaataaatgaagattgtgtaacttatccatattttctagaagccaaataaatgaagattgtgtaacttaaccatgt |
23035774 |
T |
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| Q |
218 |
ttggctattattcggcaaaaccctatattagtttacaggttcacacgtaaacttcttttggggattgtggtaatatttaatgagagtccaagagaagtac |
317 |
Q |
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| T |
23035773 |
ttggctagtattcggcaaaaccctatattagtttataggttcacaggtaaacttctttaggggattgtggaaatattttatgagagtccaagaaaactac |
23035674 |
T |
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| Q |
318 |
ttcgtacatgtgtgacatgataaatgaagtagttaaaga |
356 |
Q |
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| T |
23035673 |
ttcgtacatgtgtgacatgataaatgaagtggttaaaga |
23035635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 23148515 - 23148399
Alignment:
| Q |
65 |
taatatttttagcagggtaccgaacagataccttcgatcggtagaaataagtaggctatgtttggcaataagagttaaaagaaatgaagattgtgtaact |
164 |
Q |
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| T |
23148515 |
taatgtttttagcagagtgccgaaaacataccttcttccggtcgaaataagtgggctatgcttggcaataagagttaaaataaatgaagattgttcaact |
23148416 |
T |
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| Q |
165 |
tatccatattttctaga |
181 |
Q |
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| T |
23148415 |
taaccatgtttactaga |
23148399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 23145671 - 23145561
Alignment:
| Q |
71 |
ttttagcagggtaccgaacagataccttcgatcggtagaaataagtaggctatgtttggcaataagagttaaaagaaatgaagattgtgtaacttatcca |
170 |
Q |
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||||||||| || ||||| | |||||||| | || ||||||||| ||||||| ||||| ||||||||||||| |||| |||||||| |||||| ||| |
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| T |
23145671 |
ttttagcagagtgccgaaaacataccttcttccagtcgaaataagttggctatgcttggctataagagttaaaataaataaagattgttcaacttaacca |
23145572 |
T |
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| Q |
171 |
tattttctaga |
181 |
Q |
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| T |
23145571 |
tgtttactaga |
23145561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 9639115 - 9639062
Alignment:
| Q |
322 |
tacatgtgtgacatgataaatgaagtagttaaagagagaggaaaagggatagaa |
375 |
Q |
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| T |
9639115 |
tacatatgtgacatgataaatgaagtgatcaaagagggagaaaaagggatagaa |
9639062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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