View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21509_high_3 (Length: 404)

Name: NF21509_high_3
Description: NF21509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21509_high_3
NF21509_high_3
[»] chr8 (20 HSPs)
chr8 (291-400)||(15348435-15348544)
chr8 (20-123)||(44081784-44081887)
chr8 (30-123)||(12665348-12665441)
chr8 (31-123)||(30432343-30432435)
chr8 (20-127)||(10203664-10203771)
chr8 (20-123)||(42162602-42162705)
chr8 (31-123)||(36189220-36189312)
chr8 (20-123)||(31318809-31318912)
chr8 (31-127)||(33726011-33726107)
chr8 (204-284)||(15272013-15272096)
chr8 (31-123)||(18184557-18184649)
chr8 (20-127)||(43186027-43186134)
chr8 (34-122)||(31545-31633)
chr8 (39-107)||(42668884-42668952)
chr8 (308-400)||(12199897-12199989)
chr8 (308-400)||(12444325-12444417)
chr8 (333-400)||(12194916-12194983)
chr8 (333-400)||(12439344-12439411)
chr8 (36-122)||(3690702-3690788)
chr8 (344-400)||(4032312-4032368)
[»] scaffold0062 (1 HSPs)
scaffold0062 (20-127)||(6718-6825)
[»] chr2 (11 HSPs)
chr2 (20-123)||(16089826-16089928)
chr2 (20-123)||(33732573-33732676)
chr2 (20-123)||(44958117-44958220)
chr2 (31-123)||(36315565-36315657)
chr2 (31-121)||(37914331-37914421)
chr2 (25-122)||(3830986-3831081)
chr2 (36-123)||(14572999-14573086)
chr2 (30-123)||(37498959-37499052)
chr2 (58-121)||(6376355-6376418)
chr2 (31-121)||(24137187-24137281)
chr2 (44-119)||(41188777-41188852)
[»] chr1 (14 HSPs)
chr1 (20-127)||(2509024-2509131)
chr1 (20-123)||(39249947-39250050)
chr1 (20-123)||(34307222-34307325)
chr1 (20-123)||(46901819-46901922)
chr1 (20-121)||(19258756-19258857)
chr1 (44-122)||(10146971-10147049)
chr1 (20-121)||(28647359-28647460)
chr1 (342-398)||(24322086-24322142)
chr1 (337-395)||(24415456-24415514)
chr1 (39-123)||(29099821-29099904)
chr1 (337-400)||(24309796-24309859)
chr1 (334-400)||(24340030-24340096)
chr1 (36-109)||(9642966-9643039)
chr1 (333-398)||(24366770-24366835)
[»] chr3 (25 HSPs)
chr3 (30-123)||(22894684-22894777)
chr3 (20-123)||(34749982-34750085)
chr3 (20-123)||(43999993-44000096)
chr3 (31-123)||(29460664-29460756)
chr3 (31-123)||(29471516-29471608)
chr3 (39-123)||(38231297-38231381)
chr3 (20-123)||(36749410-36749513)
chr3 (30-123)||(21559565-21559658)
chr3 (31-123)||(30735590-30735682)
chr3 (20-123)||(36370422-36370525)
chr3 (20-127)||(46112028-46112135)
chr3 (20-123)||(51339867-51339968)
chr3 (31-119)||(20856247-20856334)
chr3 (31-121)||(39072368-39072458)
chr3 (30-123)||(48200689-48200782)
chr3 (30-123)||(50966135-50966227)
chr3 (30-123)||(51069270-51069362)
chr3 (36-105)||(53638157-53638226)
chr3 (333-400)||(11024933-11025000)
chr3 (31-121)||(39467196-39467286)
chr3 (333-400)||(11015921-11015988)
chr3 (36-120)||(29820399-29820483)
chr3 (333-400)||(11006358-11006425)
chr3 (333-400)||(47452303-47452370)
chr3 (37-121)||(5417684-5417768)
[»] chr6 (8 HSPs)
chr6 (31-123)||(3987000-3987092)
chr6 (21-123)||(3118132-3118234)
chr6 (36-121)||(14022940-14023025)
chr6 (20-123)||(15345743-15345844)
chr6 (31-123)||(13697573-13697664)
chr6 (25-121)||(24208450-24208546)
chr6 (333-399)||(21015391-21015457)
chr6 (357-399)||(21980041-21980083)
[»] chr5 (23 HSPs)
chr5 (20-123)||(40888026-40888129)
chr5 (30-121)||(13347134-13347225)
chr5 (20-123)||(39370931-39371034)
chr5 (20-121)||(2237282-2237383)
chr5 (30-123)||(33404530-33404623)
chr5 (20-116)||(14831555-14831651)
chr5 (20-123)||(9408123-9408226)
chr5 (25-123)||(27553462-27553560)
chr5 (31-123)||(1815711-1815803)
chr5 (20-123)||(4300627-4300730)
chr5 (38-121)||(19596169-19596252)
chr5 (31-123)||(17225323-17225413)
chr5 (336-399)||(42562728-42562791)
chr5 (31-118)||(41003945-41004031)
chr5 (336-399)||(29712866-29712929)
chr5 (39-123)||(12164255-12164339)
chr5 (31-90)||(31800595-31800654)
chr5 (336-392)||(29687669-29687725)
chr5 (36-127)||(19124572-19124661)
chr5 (349-398)||(178650-178699)
chr5 (333-398)||(1812040-1812105)
chr5 (334-395)||(29695768-29695829)
chr5 (74-122)||(3725730-3725778)
[»] chr4 (47 HSPs)
chr4 (20-123)||(3672278-3672381)
chr4 (20-123)||(28093180-28093283)
chr4 (30-123)||(49243819-49243912)
chr4 (31-123)||(46192363-46192455)
chr4 (31-123)||(21391050-21391142)
chr4 (30-123)||(6112634-6112727)
chr4 (31-123)||(45829352-45829444)
chr4 (20-123)||(7217769-7217872)
chr4 (20-123)||(44275710-44275813)
chr4 (305-398)||(48735713-48735806)
chr4 (31-123)||(35544916-35545008)
chr4 (306-398)||(48870130-48870222)
chr4 (306-398)||(48885816-48885908)
chr4 (305-400)||(7770991-7771086)
chr4 (305-400)||(45372453-45372548)
chr4 (309-399)||(48170986-48171076)
chr4 (334-399)||(48862857-48862922)
chr4 (335-398)||(48156825-48156888)
chr4 (31-122)||(51038768-51038859)
chr4 (333-398)||(7789704-7789769)
chr4 (334-399)||(45366618-45366683)
chr4 (333-398)||(48891024-48891089)
chr4 (308-399)||(48148082-48148173)
chr4 (337-399)||(33134223-33134285)
chr4 (333-400)||(7238116-7238183)
chr4 (320-398)||(50668645-50668723)
chr4 (343-400)||(7904657-7904714)
chr4 (343-400)||(49041534-49041591)
chr4 (41-122)||(52191305-52191386)
chr4 (333-400)||(7813095-7813162)
chr4 (333-400)||(7822584-7822651)
chr4 (333-404)||(7907940-7908011)
chr4 (342-400)||(7877344-7877402)
chr4 (334-392)||(45385191-45385249)
chr4 (36-122)||(54849793-54849879)
chr4 (335-400)||(48902567-48902632)
chr4 (333-400)||(7800252-7800319)
chr4 (319-398)||(48875447-48875526)
chr4 (334-399)||(33133653-33133718)
chr4 (338-399)||(48898342-48898403)
chr4 (340-400)||(7774225-7774285)
chr4 (333-400)||(7786058-7786125)
chr4 (63-122)||(25437012-25437071)
chr4 (81-123)||(43245522-43245564)
chr4 (336-398)||(47207552-47207614)
chr4 (349-399)||(49044626-49044676)
chr4 (349-399)||(49048996-49049046)
[»] chr7 (26 HSPs)
chr7 (30-123)||(7699977-7700070)
chr7 (30-123)||(7700175-7700268)
chr7 (30-123)||(7700373-7700466)
chr7 (30-123)||(7700571-7700664)
chr7 (20-123)||(26972287-26972390)
chr7 (31-123)||(42221058-42221150)
chr7 (20-123)||(28307579-28307682)
chr7 (31-121)||(31148296-31148386)
chr7 (30-123)||(36346658-36346751)
chr7 (31-127)||(23980131-23980227)
chr7 (20-123)||(45782744-45782847)
chr7 (36-121)||(13108154-13108239)
chr7 (31-127)||(21807417-21807513)
chr7 (31-123)||(34828070-34828161)
chr7 (20-123)||(30887704-30887807)
chr7 (20-123)||(34108430-34108533)
chr7 (31-121)||(5811258-5811348)
chr7 (37-121)||(15020288-15020370)
chr7 (39-127)||(38321009-38321097)
chr7 (31-106)||(36957450-36957525)
chr7 (31-92)||(20086723-20086784)
chr7 (62-93)||(29953661-29953692)
chr7 (31-85)||(46475066-46475120)
chr7 (309-398)||(48883373-48883465)
chr7 (36-85)||(42950113-42950162)
chr7 (89-122)||(42950156-42950189)
[»] scaffold0043 (1 HSPs)
scaffold0043 (20-127)||(87248-87354)
[»] scaffold0508 (1 HSPs)
scaffold0508 (334-400)||(11878-11944)
[»] scaffold0277 (1 HSPs)
scaffold0277 (62-100)||(5943-5981)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 291 - 400
Target Start/End: Original strand, 15348435 - 15348544
Alignment:
Q  291 actaccttacctatctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttct 390  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15348435 actaccttacctgtctcatgaattaatagttcaaattctagagaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttct 15348534  T
Q  391 cttatctctg 400  Q
    ||||||||||    
T  15348535 cttatctctg 15348544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 44081887 - 44081784
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44081887 atcatcaccctttttcatctcttctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtat 44081788  T
Q  120 aaga 123  Q
    ||||    
T  44081787 aaga 44081784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 12665441 - 12665348
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12665441 ttttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 12665348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 30432435 - 30432343
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  30432435 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataaga 30432343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 10203771 - 10203664
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    ||||||||| ||||| ||||||||||||||| |||||  |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||    
T  10203771 atcaccaccctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtat 10203672  T
Q  120 aagaactc 127  Q
    ||||||||    
T  10203671 aagaactc 10203664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 42162705 - 42162602
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  42162705 atcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtat 42162606  T
Q  120 aaga 123  Q
    ||||    
T  42162605 aaga 42162602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 36189312 - 36189220
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36189312 ttttcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataaga 36189220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 31318912 - 31318809
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||    
T  31318912 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtat 31318813  T
Q  120 aaga 123  Q
    ||||    
T  31318812 aaga 31318809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 33726107 - 33726011
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagaactc 127  Q
    |||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||| |||||    
T  33726107 ttttcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataacaactc 33726011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 15272013 - 15272096
Alignment:
Q  204 gtattcgtaaccctaaatcaagtggaccgaaatgaagaaaagaaacc---gtcgcagagggagtaagcgcactgagaagaaaaa 284  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||    
T  15272013 gtatttgtaaccctaaatcaagtggaccgaaatgaagaaaagaaaccaaagtcgcagagggagtaagcgcacagagaagaaaaa 15272096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 18184649 - 18184557
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| |||||||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||||||| |||||||    
T  18184649 ttttcatctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataaga 18184557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 43186134 - 43186027
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||| |||||||||||||||| |||| | |||||||||||||  |||||||||| || |||||||||||| |||||| ||||||    
T  43186134 atcatcaccttttttcatcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtat 43186035  T
Q  120 aagaactc 127  Q
    ||||||||    
T  43186034 aagaactc 43186027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 31545 - 31633
Alignment:
Q  34 ttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 122  Q
    ||||||||||||||||||||||| |||| |||||||| ||| ||||||||| |||| |||||||| ||||||| |||| ||| ||||||    
T  31545 ttatctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 42668884 - 42668952
Alignment:
Q  39 tcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagg 107  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||    
T  42668884 tcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatgccacctaagg 42668952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 12199897 - 12199989
Alignment:
Q  308 atgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    ||||||||||  ||||||| ||   |||||| |||||||| |||||| || |||||||||| ||||||||||| |||||||||||||||||||    
T  12199897 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 12199989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 12444325 - 12444417
Alignment:
Q  308 atgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    ||||||||||  ||||||| ||   |||||| |||||||| |||||| || |||||||||| ||||||||||| |||||||||||||||||||    
T  12444325 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctg 12444417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 12194916 - 12194983
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| |||||||| |||||| || ||||||||||| |||||||||| ||||| |||||||||||||    
T  12194916 gaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12194983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 12439344 - 12439411
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| |||||||| |||||| || ||||||||||| |||||||||| ||||| |||||||||||||    
T  12439344 gaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12439411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 3690702 - 3690788
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 122  Q
    ||||||||||| ||| ||||  | || |||||||| ||||||||| | | ||||| |||||| |||||||| || ||||||||||||    
T  3690702 atctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 4032368 - 4032312
Alignment:
Q  344 tgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||| ||||||||||||||||| || |||||||| ||||||||  ||||||| ||||    
T  4032368 tgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatctg 4032312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 6825 - 6718
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6825 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 6726  T
Q  120 aagaactc 127  Q
    ||||||||    
T  6725 aagaactc 6718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 16089928 - 16089826
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16089928 atcaccacc-ttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtat 16089830  T
Q  120 aaga 123  Q
    ||||    
T  16089829 aaga 16089826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 33732676 - 33732573
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    ||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33732676 atcaccaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 33732577  T
Q  120 aaga 123  Q
    ||||    
T  33732576 aaga 33732573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 44958220 - 44958117
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44958220 atcatcacccttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 44958121  T
Q  120 aaga 123  Q
    ||||    
T  44958120 aaga 44958117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 36315657 - 36315565
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315657 tttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 36315565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 37914331 - 37914421
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  37914331 tttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataa 37914421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 3830986 - 3831081
Alignment:
Q  25 caccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 122  Q
    ||||| |||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  3830986 caccacttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtg--tgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataag 3831081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 14573086 - 14572999
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||    
T  14573086 atctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataaga 14572999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 37498959 - 37499052
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||  |||| ||||| || |||||||    
T  37498959 tttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataaga 37499052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 6376355 - 6376418
Alignment:
Q  58 ccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  6376355 ccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 6376418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 24137187 - 24137281
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtg----ggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||| |||||||||||||||||||||  ||| |||||||||||||||||    ||||| ||||||||||| ||||||||||||||| ||||||||    
T  24137187 ttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaagggtgtataccacctaaggtggtttatgtataa 24137281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 41188852 - 41188777
Alignment:
Q  44 tttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    ||||||||||||| |||| ||||| |||| ||| | | | |||||||||||||| ||| ||| |||||||||||||    
T  41188852 tttcaatgtttttgccacatgtcataaatatgtatagatataaaagggtgtatgtcacataaagtggttcatgtat 41188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 2509131 - 2509024
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  2509131 atcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtat 2509032  T
Q  120 aagaactc 127  Q
    ||||||||    
T  2509031 aagaactc 2509024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 39249947 - 39250050
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    ||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  39249947 atcaccatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtat 39250046  T
Q  120 aaga 123  Q
    ||||    
T  39250047 aaga 39250050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 34307222 - 34307325
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| || |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  34307222 atcatcaccctttttcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtat 34307321  T
Q  120 aaga 123  Q
    ||||    
T  34307322 aaga 34307325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 46901819 - 46901922
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||    
T  46901819 atcatcaccctttttcatctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtat 46901918  T
Q  120 aaga 123  Q
    ||||    
T  46901919 aaga 46901922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 19258756 - 19258857
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||||||||  |||| ||||||| ||||||||||||| |||| |||||||||| | ||||||||||||| |||||||||||||| || ||||| ||||||    
T  19258756 atcaccaccccttttcatctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtat 19258855  T
Q  120 aa 121  Q
    ||    
T  19258856 aa 19258857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 10147049 - 10146971
Alignment:
Q  44 tttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 122  Q
    ||||| ||||||| |||| |||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 28647460 - 28647359
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||||||||  |||| |||| |||||||||||||||| |||  | |||||||| ||||||||||||||| | ||||||| |||| |||||||||||||||    
T  28647460 atcaccaccccttttcatctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtat 28647361  T
Q  120 aa 121  Q
    ||    
T  28647360 aa 28647359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 24322086 - 24322142
Alignment:
Q  342 ggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24322086 ggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 24415456 - 24415514
Alignment:
Q  337 ttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 395  Q
    |||||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  24415456 ttaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 29099904 - 29099821
Alignment:
Q  39 tcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| |||||||||||||  ||| ||||||||||||||||||  ||||| | |||||||||| ||||||||||| ||||||||||    
T  29099904 tcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgtaaa-gagtgtatgccatctaaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 24309796 - 24309859
Alignment:
Q  337 ttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||||| || |||||||| |||||||||| |||||||||||  |||||||||||||||||||    
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctg 24309859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 24340030 - 24340096
Alignment:
Q  334 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    ||||||||||| || |||||||| ||||||||||  ||||||||||| |||||||| ||||||||||    
T  24340030 aggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctg 24340096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 9642966 - 9643039
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtg 109  Q
    ||||||||||||| |||||||  || ||||||||| | ||||||||||| ||| ||| ||||||| ||||||||    
T  9642966 atctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaaaggtatatgccatctaaggtg 9643039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 24366770 - 24366835
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    ||||||||| ||  || |||| || ||||||||||| ||||| ||||| |||||||||||||||||    
T  24366770 gaggttaccagttgaaactctgattcgtttcaaatgtgtttgcaagtcatggttttctcttatctc 24366835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 22894777 - 22894684
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894777 tttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 22894684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 34749982 - 34750085
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34749982 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 34750081  T
Q  120 aaga 123  Q
    ||||    
T  34750082 aaga 34750085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 44000096 - 43999993
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  44000096 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtat 43999997  T
Q  120 aaga 123  Q
    ||||    
T  43999996 aaga 43999993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 29460756 - 29460664
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 29460664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 29471608 - 29471516
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 29471516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 38231381 - 38231297
Alignment:
Q  39 tcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38231381 tcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 38231297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 36749513 - 36749410
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  36749513 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtat 36749414  T
Q  120 aaga 123  Q
    ||||    
T  36749413 aaga 36749410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 21559658 - 21559565
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  21559658 tttttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataaga 21559565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 30735590 - 30735682
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  30735590 tttttatatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataaga 30735682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 36370422 - 36370525
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||||||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  36370422 atcatcaccctttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtat 36370521  T
Q  120 aaga 123  Q
    ||||    
T  36370522 aaga 36370525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 46112028 - 46112135
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||    
T  46112028 atcatcaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtat 46112127  T
Q  120 aagaactc 127  Q
    ||||||||    
T  46112128 aagaactc 46112135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 51339867 - 51339968
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  51339867 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtat 51339964  T
Q  120 aaga 123  Q
    ||||    
T  51339965 aaga 51339968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 20856247 - 20856334
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    ||||||| |||| ||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  20856247 tttttatatctt-tttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 39072368 - 39072458
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||| ||||||||||| ||||||| | |||| |||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||    
T  39072368 ttttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataa 39072458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 48200782 - 48200689
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||| | ||||| ||||||| ||||||||||||||||| || |||||| ||||||    
T  48200782 tttttcatctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataaga 48200689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 50966227 - 50966135
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||| ||||||||||||||| |||||  |||||||||||||||||  | | ||||||||||||||||||||||||| | ||||||||||||||    
T  50966227 tttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtataaga 50966135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 51069362 - 51069270
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||| ||||||||||||||| |||||  |||||||||||||||||  | | ||||||||||||||||||||||||| | ||||||||||||||    
T  51069362 tttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgccacctaagat-gttcatgtataaga 51069270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 53638226 - 53638157
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 105  Q
    |||||||||||| ||||||||||||| |||||| | ||||||||||||| ||||||||||||||||||||    
T  53638226 atctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgtatgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 11025000 - 11024933
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||  ||||||||||||    
T  11025000 gaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctg 11024933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 39467196 - 39467286
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||| ||||||||||||||| |||||  ||| |||||||||| |||||||||||||||||||||||| || ||| ||||||| ||| ||||    
T  39467196 ttttcatctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataa 39467286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 11015988 - 11015921
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| | |||  ||||||||||||    
T  11015988 gaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctctg 11015921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 29820399 - 29820483
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtata 120  Q
    ||||||||||| ||||||||| | || | |||||| ||| ||||||||| |||| |||||||||||||||||||||  |||||||    
T  29820399 atctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 11006425 - 11006358
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| |||||||| || |||||||||||||| || ||||||||||| |||||  ||||||||||||    
T  11006425 gaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctg 11006358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 47452370 - 47452303
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| |||||||| |||||| |||| ||||| ||| ||| |||||| |||||||||||||||||||    
T  47452370 gaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctg 47452303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 5417684 - 5417768
Alignment:
Q  37 tctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||||||||| ||| ||||| |||| ||| | || ||| |||| |||| |||| ||||||||||||||| ||||| ||| |||||    
T  5417684 tctcttcttttaatatttttgccacatgttataattgtatgtgagtgtcaaagtgtgtatgccacctaaagtggtccatatataa 5417768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 3987000 - 3987092
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3987000 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 3987092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 3118132 - 3118234
Alignment:
Q  21 tcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtata 120  Q
    |||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3118132 tcaccacccttttttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatata 3118231  T
Q  121 aga 123  Q
    |||    
T  3118232 aga 3118234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 14023025 - 14022940
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14023025 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataa 14022940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 15345743 - 15345844
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||| |||||||||||||||| ||||||||||||||  ||| |||||||||||| || ||||||||||||||||||| ||||||    
T  15345743 atcatcaccttttttcatcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtat 15345840  T
Q  120 aaga 123  Q
    ||||    
T  15345841 aaga 15345844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 13697664 - 13697573
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| ||| || ||||| ||||| ||||||||||    
T  13697664 ttttcatctcttctttcaatgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataaga 13697573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 24208546 - 24208450
Alignment:
Q  25 caccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||| ||||| ||||||||||||||||||||| |||| | ||||||||||||||||||||||||  |||||| ||||||| | ||||| ||||||||    
T  24208546 caccctttttcatctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataa 24208450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 21015391 - 21015457
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    |||||||||||| |  |||||| |||||||||| || ||||||||||  | ||||||||||||||||    
T  21015391 gaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctct 21015457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 21980083 - 21980041
Alignment:
Q  357 acgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    ||||||||| || ||||||||||||||||||||||| ||||||    
T  21980083 acgtttcaagtgtgtttgtaagtcttggttttctctcatctct 21980041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 40888026 - 40888129
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  40888026 atcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtat 40888125  T
Q  120 aaga 123  Q
    ||||    
T  40888126 aaga 40888129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 13347225 - 13347134
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13347225 tttttcatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 13347134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 39371034 - 39370931
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39371034 atcatcaccctttttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtat 39370935  T
Q  120 aaga 123  Q
    ||||    
T  39370934 aaga 39370931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 2237383 - 2237282
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  2237383 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtat 2237284  T
Q  120 aa 121  Q
    ||    
T  2237283 aa 2237282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 33404530 - 33404623
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  33404530 tttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataaga 33404623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 14831651 - 14831555
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 116  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14831651 atcatcaccctttttcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 9408123 - 9408226
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  9408123 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtat 9408222  T
Q  120 aaga 123  Q
    ||||    
T  9408223 aaga 9408226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 27553462 - 27553560
Alignment:
Q  25 caccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||  ||||||||||||||||    
T  27553462 caccatttttcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataaga 27553560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 1815711 - 1815803
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||    
T  1815711 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataaga 1815803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 4300627 - 4300730
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||||| ||||||||||||||||| | |||| |||||||  ||||||||||||    
T  4300627 atcaccaccattttttatctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtat 4300726  T
Q  120 aaga 123  Q
    ||||    
T  4300727 aaga 4300730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 19596169 - 19596252
Alignment:
Q  38 ctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    ||||||||||||||||||| |||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||    
T  19596169 ctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataa 19596252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 17225413 - 17225323
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| |||||||||||||||||||||  ||| ||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||    
T  17225413 ttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--gagtatgccacctaaagtggttcatgtataaga 17225323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 42562791 - 42562728
Alignment:
Q  336 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  42562791 gttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctct 42562728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 41003945 - 41004031
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgta 118  Q
    ||||||| |||| ||||||| ||||| |||| ||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  41003945 tttttatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccacctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 29712929 - 29712866
Alignment:
Q  336 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    |||||||||||| |||||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  29712929 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 12164339 - 12164255
Alignment:
Q  39 tcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||||||||||||||||| |||| || ||||| |||||||| || | ||||  ||| ||||||||||| ||||||||||||||||    
T  12164339 tcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataaga 12164255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 31800654 - 31800595
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagg 90  Q
    |||| |||| |||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  31800654 ttttcatcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaagg 31800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 29687669 - 29687725
Alignment:
Q  336 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 392  Q
    |||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||    
T  29687669 gttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctct 29687725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 19124572 - 19124661
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagaactc 127  Q
    ||||||||||| ||||||||| ||||  ||||||| ||||||||||||| |||  |||||||||| ||||| | || |||||||||||||||    
T  19124572 atctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgtatgccatctaagatagtccatgtataagaactc 19124661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 178650 - 178699
Alignment:
Q  349 tctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  178650 tctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 1812040 - 1812105
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    ||||||||| ||||| | ||| ||||||| |||||| ||||||||||  |||||||||||||||||    
T  1812040 gaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 29695768 - 29695829
Alignment:
Q  334 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttat 395  Q
    |||||||| || || |||||||| ||||||||||||||||||||||  ||||| ||||||||    
T  29695768 aggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttat 29695829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 3725778 - 3725730
Alignment:
Q  74 tgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 122  Q
    ||||||| ||| |||| || |||||||||||||||||| ||||||||||    
T  3725778 tgtgtggttgttaaagagtatatgccacctaaggtggtccatgtataag 3725730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 3672381 - 3672278
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3672381 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtat 3672282  T
Q  120 aaga 123  Q
    ||||    
T  3672281 aaga 3672278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 28093180 - 28093283
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28093180 atcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 28093279  T
Q  120 aaga 123  Q
    ||||    
T  28093280 aaga 28093283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 49243912 - 49243819
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49243912 ttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataaga 49243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 46192455 - 46192363
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46192455 tttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataaga 46192363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 21391050 - 21391142
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21391050 ttttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataaga 21391142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 6112727 - 6112634
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  6112727 tttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 6112634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 45829352 - 45829444
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  45829352 tttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataaga 45829444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 7217872 - 7217769
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||    
T  7217872 atcatcacccttttttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtat 7217773  T
Q  120 aaga 123  Q
    ||||    
T  7217772 aaga 7217769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 44275813 - 44275710
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||| |||||  ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||    
T  44275813 atcatcaccctttttaatctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtat 44275714  T
Q  120 aaga 123  Q
    ||||    
T  44275713 aaga 44275710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 48735806 - 48735713
Alignment:
Q  305 ctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    ||||||| || ||||||||||||||   ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  48735806 ctcatgagttgatagttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 35545008 - 35544916
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||| |||||||||||||||||| |||||| |||||||||| ||||| ||||||| ||||||| ||||||||| ||||||||||||||||    
T  35545008 tttttatatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataaga 35544916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 48870130 - 48870222
Alignment:
Q  306 tcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    ||||||||| ||||||||||||||   |||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  48870130 tcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48870222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 48885816 - 48885908
Alignment:
Q  306 tcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    ||||||||| ||||||||||||||   |||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  48885816 tcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctc 48885908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 7770991 - 7771086
Alignment:
Q  305 ctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||||| ||||| | ||||||||   |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7770991 ctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 7771086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 45372548 - 45372453
Alignment:
Q  305 ctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||||||| ||  |||||||||||   ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  45372548 ctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctg 45372453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 399
Target Start/End: Complemental strand, 48171076 - 48170986
Alignment:
Q  309 tgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    |||||| ||||||||||||||   ||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  48171076 tgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctct 48170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 48862857 - 48862922
Alignment:
Q  334 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  48862857 aggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 48156888 - 48156825
Alignment:
Q  335 ggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  48156888 ggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctc 48156825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 51038859 - 51038768
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 122  Q
    |||| |||||||||||||||||||||  ||| |||||||| ||||||||||||| ||||  |||||||||||||||||||| ||| ||||||    
T  51038859 ttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtatgccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 7789704 - 7789769
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  7789704 gaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctc 7789769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 399
Target Start/End: Complemental strand, 45366683 - 45366618
Alignment:
Q  334 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  45366683 aggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctct 45366618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 48891024 - 48891089
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48891024 gaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctc 48891089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 48148173 - 48148082
Alignment:
Q  308 atgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    ||||||| ||||||||||| ||    |||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||    
T  48148173 atgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctct 48148082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 33134285 - 33134223
Alignment:
Q  337 ttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    ||||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctct 33134223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 7238183 - 7238116
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| || ||||| ||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  7238183 gaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctg 7238116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 50668645 - 50668723
Alignment:
Q  320 ttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    |||||||| | | |||||| || ||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||    
T  50668645 ttcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctc 50668723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 7904657 - 7904714
Alignment:
Q  343 gtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    ||||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctg 7904714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 49041591 - 49041534
Alignment:
Q  343 gtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    ||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  49041591 gtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctg 49041534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 52191305 - 52191386
Alignment:
Q  41 ttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 122  Q
    ||||||||||||||||  ||| |||||||| | ||||||| ||| ||| ||| |||||||||||||||||| ||||||||||    
T  52191305 ttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataag 52191386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 7813095 - 7813162
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| |||||||| | ||||||||||||||| || |||||||| || |||||||||||||||||||    
T  7813095 gaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctg 7813162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 7822584 - 7822651
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| |||||||| | ||||||||||||||| || |||||||| || |||||||||||||||||||    
T  7822584 gaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctg 7822651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 7907940 - 7908011
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgctcc 404  Q
    |||||| |||||||| ||||||| ||||||||| |  ||| ||||||| |||||||||||||||||||||||    
T  7907940 gaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctcc 7908011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 7877344 - 7877402
Alignment:
Q  342 ggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| ||||||||||||||||||||| ||||||||   |||||||||||||||||||    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctg 7877402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 334 - 392
Target Start/End: Complemental strand, 45385249 - 45385191
Alignment:
Q  334 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctct 392  Q
    |||||||| || || ||||| ||||||||||||| ||||||||||||||||||||||||    
T  45385249 aggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtcttggttttctct 45385191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 54849879 - 54849793
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 122  Q
    ||||||||||||||| |||||  ||| |||||||| || |||||||| | |||| ||||| || | |||||||||||||||||||||    
T  54849879 atctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgtacgctatctaaggtggttcatgtataag 54849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 48902567 - 48902632
Alignment:
Q  335 ggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||| ||||| || ||||| || ||||||||||| |||||||||||||||||||||||||| ||||    
T  48902567 ggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttatatctg 48902632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 7800252 - 7800319
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| |||||||| | ||||||||||||||| || |||||||| || |||||||||||| ||||||    
T  7800252 gaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctg 7800319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 48875447 - 48875526
Alignment:
Q  319 gttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    |||||||||||   ||||||| | || || ||||| || ||||||||||||||||| ||||||||||||||||| |||||    
T  48875447 gttcaaattctgctgaggttatcagtcaagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctctcatctc 48875526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 33133653 - 33133718
Alignment:
Q  334 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    ||||||||  |||| |||||||| |||||||||| | ||||||||  |||||||||||||||||||    
T  33133653 aggttaccaatgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttatctct 33133718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 48898342 - 48898403
Alignment:
Q  338 taccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    |||| ||||| ||||||| ||||||||| || ||||||||||||||||| || |||||||||    
T  48898342 tacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctct 48898403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 7774285 - 7774225
Alignment:
Q  340 ccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||||| |||||||| | ||||||||| |||||||||   |||||||||||||||||||    
T  7774285 ccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctctg 7774225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 7786058 - 7786125
Alignment:
Q  333 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    |||||| ||||||||||||||||||   ||||||||||||||||||   ||| ||||| |||||||||    
T  7786058 gaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctg 7786125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 25437012 - 25437071
Alignment:
Q  63 tgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 122  Q
    |||||||| ||||| ||| ||| ||| |||||||| ||||||||||||| ||||||||||    
T  25437012 tgtcacaattgtgtatggatgttaaaaggtgtatgtcacctaaggtggtccatgtataag 25437071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 43245564 - 43245522
Alignment:
Q  81 gtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||||||||||||| || ||||| ||||||||||||||||    
T  43245564 gtgtaaaagggtgtatgtcatctaagatggttcatgtataaga 43245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 398
Target Start/End: Original strand, 47207552 - 47207614
Alignment:
Q  336 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 398  Q
    |||||||||||| |||||||||||||| ||  | ||||| |||||||| |||||||| |||||    
T  47207552 gttaccggtgaagtctcttatacgttttaagagtgtttggaagtcttgattttctctcatctc 47207614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 49044676 - 49044626
Alignment:
Q  349 tctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    |||||| |||||||||| || ||||||||||  ||||||||||||||||||    
T  49044676 tctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49044626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 49049046 - 49048996
Alignment:
Q  349 tctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 399  Q
    |||||| |||||||||| || ||||||||||  ||||||||||||||||||    
T  49049046 tctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 7699977 - 7700070
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  7699977 ttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataaga 7700070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 7700175 - 7700268
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  7700175 ttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataaga 7700268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 7700373 - 7700466
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  7700373 ttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataaga 7700466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 7700571 - 7700664
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  7700571 ttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataaga 7700664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 26972287 - 26972390
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26972287 atcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 26972386  T
Q  120 aaga 123  Q
    ||||    
T  26972387 aaga 26972390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 42221058 - 42221150
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  42221058 tttttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataaga 42221150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 28307579 - 28307682
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  28307579 atcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtat 28307678  T
Q  120 aaga 123  Q
    ||||    
T  28307679 aaga 28307682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 31148386 - 31148296
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31148386 ttttcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 36346658 - 36346751
Alignment:
Q  30 ttttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  36346658 tttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataaga 36346751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 23980227 - 23980131
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagaactc 127  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  23980227 ttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacaactc 23980131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 45782744 - 45782847
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||    
T  45782744 atcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtat 45782843  T
Q  120 aaga 123  Q
    ||||    
T  45782844 aaga 45782847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 13108239 - 13108154
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  13108239 atctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataa 13108154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 21807417 - 21807513
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagaactc 127  Q
    |||| ||||||||||||||| ||||| |||| | |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  21807417 ttttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagaactc 21807513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 34828161 - 34828070
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 123  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||    
T  34828161 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataaga 34828070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 30887807 - 30887704
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||||||| |||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||||    
T  30887807 atcatcaccctttttcatctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtat 30887708  T
Q  120 aaga 123  Q
    ||||    
T  30887707 aaga 30887704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 34108533 - 34108430
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| |||| ||||| |||||||| ||||||||||||  ||  |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  34108533 atcatcaccctttttcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtat 34108434  T
Q  120 aaga 123  Q
    ||||    
T  34108433 aaga 34108430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 5811258 - 5811348
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||    
T  5811258 ttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataa 5811348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 15020370 - 15020288
Alignment:
Q  37 tctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 121  Q
    |||||||||||||||||||| |||  |||||||||||||||  ||||||||||| ||||||||||||| ||||||| ||||||||    
T  15020370 tctcttctttcaatgtttttgccatatgtcacaaatgtgtg--ggtgtaaaaggttgtatgccacctatggtggtttatgtataa 15020288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 38321097 - 38321009
Alignment:
Q  39 tcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagaactc 127  Q
    |||||||||||||||||| |||| |||||||| ||| ||||||||| |||  |||||||||||||||| ||||| ||||||||| ||||    
T  38321097 tcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtataaggactc 38321009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 36957525 - 36957450
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaag 106  Q
    |||| |||||||||| |||| |||||  |||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  36957525 ttttcatctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 20086723 - 20086784
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggt 92  Q
    |||||||||||||||| ||||||||| |||  |||| ||||||| |||||||||||||||||    
T  20086723 tttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaagggt 20086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 93
Target Start/End: Complemental strand, 29953692 - 29953661
Alignment:
Q  62 gtgtcacaaatgtgtgtgggtgtaaaagggtg 93  Q
    ||||||||||||||||||||||||||||||||    
T  29953692 gtgtcacaaatgtgtgtgggtgtaaaagggtg 29953661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 46475120 - 46475066
Alignment:
Q  31 tttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgta 85  Q
    |||| |||||||||||||||||||||   || |||||||||||||| ||||||||    
T  46475120 ttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgtatgggtgta 46475066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 48883373 - 48883465
Alignment:
Q  309 tgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaa---tgcgtttgtaagtcttggttttctcttatctc 398  Q
    |||||||||  |||||||| | | ||||||||  ||||| |||||| |||||||||||   || ||||||||| |||||||||||||| ||||    
T  48883373 tgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaaaaaatgtgtttgtaagccttggttttctcttctctc 48883465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 42950113 - 42950162
Alignment:
Q  36 atctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgta 85  Q
    ||||||| ||||||||| ||| |||| | |||||||||||||||||||||    
T  42950113 atctcttttttcaatgtatttgccacatatcacaaatgtgtgtgggtgta 42950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 42950156 - 42950189
Alignment:
Q  89 gggtgtatgccacctaaggtggttcatgtataag 122  Q
    ||||||||||||||||||||||||||||| ||||    
T  42950156 gggtgtatgccacctaaggtggttcatgtctaag 42950189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 87248 - 87354
Alignment:
Q  20 atcaccaccattttttatctcttctttcaatgtttttaccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtat 119  Q
    |||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  87248 atcatcactatttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgt-ggtgtacaagggtgtatgccacctaaggtggttcatgtat 87346  T
Q  120 aagaactc 127  Q
    ||||||||    
T  87347 aagaactc 87354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 11878 - 11944
Alignment:
Q  334 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctg 400  Q
    ||||||||| | || |||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  11878 aggttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctg 11944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  62 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 100  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University