View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21509_high_8 (Length: 262)
Name: NF21509_high_8
Description: NF21509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21509_high_8 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 60 - 262
Target Start/End: Original strand, 5823085 - 5823287
Alignment:
| Q |
60 |
agatgctatgtggcctcatcatgcgccatgaagttctaagagttggagctatttttgcttctgggcttttaagagccataaaattccttcaacttaattg |
159 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823085 |
agatgctatgtggccttatcatgcgccatgaagttctaagagttggagctatttttgcttctgggcttttaagagccataaaattccttcaacttaattg |
5823184 |
T |
|
| Q |
160 |
ggcccaattagctcatgacatctccactggaaccctaaaccctaaagtcacagacccttcaatcaaagaatgcatgtccaaaatattgaaacctgaccct |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823185 |
ggcccaattagctcatgacatctccactggaaccctaaaccctaaaatcacagacccttcaatcaaagaatgcatgtccaaaatattgaaacctgaccct |
5823284 |
T |
|
| Q |
260 |
gaa |
262 |
Q |
| |
|
||| |
|
|
| T |
5823285 |
gaa |
5823287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 5832981 - 5832797
Alignment:
| Q |
60 |
agatgctatgtggcctcatcatgcgccatgaagttctaagagttggagctatttttgcttctgggcttttaagagccataaaattccttcaacttaattg |
159 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |||| ||||| |||| ||||| |||||| | |||||||| | |||||||| || ||||| |
|
|
| T |
5832981 |
agatgctttgtggcctaatcatgcgccatgaagttcttcgagtcggagcagttttcgcttccgggcttctcagagccattaggttccttcagctgaattg |
5832882 |
T |
|
| Q |
160 |
ggcccaattagctcatgacatctccactggaaccctaaaccctaaagtcacagacccttcaatcaaagaatgcatgtccaaaata |
244 |
Q |
| |
|
||| |||||| |||||||| || |||||||||||||| ||| |||| || ||||| |||||| | |||||||| |||||| |
|
|
| T |
5832881 |
ggctgaattagtccatgacattgaaacaggaaccctaaacccaaaaatcactgatccttctatcaaacagtgcatgtcgaaaata |
5832797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University