View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21509_low_4 (Length: 374)
Name: NF21509_low_4
Description: NF21509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21509_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 12813851 - 12813506
Alignment:
| Q |
11 |
agaaaatatggcatattaaataaacttaacactttgctatcacattttaaacttaccattaccatttacaatcatatcacattagtaaacttccttgtgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813851 |
agaaaatatggcatattaaataaacttaacactttgctatcacattttaaacttaccattaccatttacaatcatatcacattagtaaacttccttgtgt |
12813752 |
T |
|
| Q |
111 |
gattattattgcaatgcaggttgtgccacacaagaaaattgtaatgggttgtcctctgagacggttggttgtggaacagattgtcactctttgtccatca |
210 |
Q |
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| T |
12813751 |
gattattattgcaatgcaggttgtgccacacaagaaaattgtaatgggttgtcctgtgagacggttggttgtggaacagattgtcactctttgtccatca |
12813652 |
T |
|
| Q |
211 |
tgggtggtgtttgatagataggtacattcattagataattaactgtttctgttcaatgatatgtaatttgcatttctaacattattaattggctatcgaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813651 |
tgggtggtgtttgatagataggtacattcattagataattaactatttctgttcaatgatatgtaatttgcatttctaacattattaattggctatcgaa |
12813552 |
T |
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| Q |
311 |
ataagaactgatgcctgacattgattgaaattgaattgtgagatct |
356 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12813551 |
ataagaactgatgtctgacattgattgaaattgaattgtgagatct |
12813506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 12750887 - 12750542
Alignment:
| Q |
11 |
agaaaatatggcatattaaataaacttaacactttgctatcacattttaaacttaccattaccatttacaatcatatcacattagtaaacttccttgtgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12750887 |
agaaaatatggcatattaaataaacttaacactttgctatcacattttaaacttaccattaccatttacaatcatatcacattagtaaacttccttgtgt |
12750788 |
T |
|
| Q |
111 |
gattattattgcaatgcaggttgtgccacacaagaaaattgtaatgggttgtcctctgagacggttggttgtggaacagattgtcactctttgtccatca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12750787 |
gattattattgcaatgcaggttgtgccacacaagaaaattgtaatgggttgtcctgtgagacggttggttgtggaacagattgtcactctttgtccatca |
12750688 |
T |
|
| Q |
211 |
tgggtggtgtttgatagataggtacattcattagataattaactgtttctgttcaatgatatgtaatttgcatttctaacattattaattggctatcgaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12750687 |
tgggtggtgtttgatagataggtacattcattagataattaactatttctgttcaatgatatgtaatttgcatttctaacattattaattggctatcgaa |
12750588 |
T |
|
| Q |
311 |
ataagaactgatgcctgacattgattgaaattgaattgtgagatct |
356 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
12750587 |
ataaaaactgatgtctgacattgattgaaattgaattgtgagatct |
12750542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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