View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21509_low_5 (Length: 338)
Name: NF21509_low_5
Description: NF21509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21509_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 31 - 323
Target Start/End: Complemental strand, 50747442 - 50747132
Alignment:
| Q |
31 |
acacttccaaacgctgctccacaaaatccaataaaactacccaacacaatttgccacccaaattccatttcctgcaacaatacaaataaacaaaagaagc |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50747442 |
acacttccaaacgctgctccacaaaatccaataaaactacccaacacaatttgccacccaaattccatttcctgcaacaatacaaataaacaaaagaagc |
50747343 |
T |
|
| Q |
131 |
actttattatattacccaaagttacaataactgacaaaaacat-----------------atccatagaatgaaggaataaa-ctaaatatttatctttt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50747342 |
actttattatattacccaaagttacaataactgacaaaaacatgtgaaaaacaaaaacatatccatagaatgaaggaataaaactaaatatttatctttt |
50747243 |
T |
|
| Q |
213 |
gatttagattcaactttaagataaaacaaagacataaaatccaacagaaaagtgaaatcttaccggccacacgtgttgataacccgatccatctgatttc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50747242 |
gatttagattcaactttaagataaaacaaagacataaaatccaacagaaaagtgaaatcttaccggccacacgtgttgataacccgatccatctgatttc |
50747143 |
T |
|
| Q |
313 |
cataagaaatt |
323 |
Q |
| |
|
||||||||||| |
|
|
| T |
50747142 |
cataagaaatt |
50747132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University