View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21509_low_6 (Length: 320)
Name: NF21509_low_6
Description: NF21509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21509_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 5822978 - 5822841
Alignment:
| Q |
45 |
taactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgccttacccttgtccaaattaggcacgtacct--- |
141 |
Q |
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| T |
5822978 |
taactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaaggaagtgaagtgccttacccttgtccaaattaggcacatacctaat |
5822879 |
T |
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| Q |
142 |
--atttcatccaaattaagaaatgttatttgataaaat |
177 |
Q |
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| T |
5822878 |
tcaattcaaccaaattaagaaatgttagttgataaaat |
5822841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 5833055 - 5833182
Alignment:
| Q |
1 |
aaatggtcttttcatgaattgttctcttttgtagatggctgtggtaactggacgtgccactaatccacttggagtttttgtttctgctttgatgaaaagg |
100 |
Q |
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| T |
5833055 |
aaatggtcttttcttaaactgttcacttttgtagtaggctgttagaactggacgtgccactaacccacttggagtttttgtttctgctttgatgaaaaga |
5833154 |
T |
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| Q |
101 |
aagtgaagtgccttacccttgtccaaat |
128 |
Q |
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| T |
5833155 |
aagtgaagtgcttttcctttgtccaaat |
5833182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 16256614 - 16256678
Alignment:
| Q |
242 |
aagtttggatggaggtgatgaattggatgcaattcaattttataactcctcctaatttgattatt |
306 |
Q |
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| T |
16256614 |
aagtttagagggaggtgatgaattggatacaattcaattttattactcctcctgatttgattatt |
16256678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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