View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2150_high_2 (Length: 490)
Name: NF2150_high_2
Description: NF2150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2150_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Complemental strand, 25337016 - 25336553
Alignment:
| Q |
13 |
attatactcttcttaatcttgaatttttctcttgtttttt-atttaaaaggtggaatcatgtacataaattgaatgtacacaaagatctaccaaataaga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25337016 |
attatactcttcttaatcttgaatttttctcttgtttttttatttaaaaggtggaattatgtacataaattgaatgtacacaaagatctaccaaataaaa |
25336917 |
T |
|
| Q |
112 |
atgtaaggatcacactaatcacgtttggagtttaagcctgtttatttaaataatggaccaaaatgcccttctatatgacaaaaatgaagtccaacaattt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25336916 |
atgtaaggatcacactaatcacgtttggagtttaagcccgtttatttaaataatggaccaaaatgcccttctatatgacaaaaatgaagtccaacaattt |
25336817 |
T |
|
| Q |
212 |
tattcttcctctttacaaaagctataaaatttgtgcaagttgttccaatattgagtgggacatgatagcttccttatatattgnnnnnnncaattttcaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25336816 |
tattcttcctctttacaaaagctataaaatttgtgcaagttgttccaatattgagtgggacatgatagcttccttatatattgtttttttcaattttcaa |
25336717 |
T |
|
| Q |
312 |
cttctcctttcctttttgatagtaacttttagttgcatggataannnnnnnnnnnnnnnnnnnnnnnctcttgaaattttcatgtatgccccatttgtcc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25336716 |
cttctcctttcctttttgatagtaacttttagttgcatggataactttctttctttcttctttcttcctcttgaaattttcatgtatgccccatttgtcc |
25336617 |
T |
|
| Q |
412 |
ttttgtgttttttgagaaatcttttaaattatgtacgttctcatttttgtcattcattttcttc |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25336616 |
ttttgtgttttttgagaaatcttttaaattatgtaccttctcatttttgtcattcattttcttc |
25336553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University