View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2150_high_7 (Length: 302)
Name: NF2150_high_7
Description: NF2150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2150_high_7 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 28573 - 28289
Alignment:
| Q |
1 |
agcataggatgggaatctcgtagttttagacacatctggtaatgaaaaaaggtactggttttctaattccaattccaaaatcaaagactcttctagtttt |
100 |
Q |
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| T |
28573 |
agcagaggatgggaatctcgtagttttagacacatccggtaatgaaaaaaggtactggttttctaattccagttccaaaatcaaagactcttctagtttt |
28474 |
T |
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| Q |
101 |
tcacctaaaaacaggacagtgaaactcatggattctggtaaccttgtgttatatgacgatgaactcatggaagtgaaactgtgggagagctttgaaaatc |
200 |
Q |
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| T |
28473 |
tcacctaaaatcagaacagtgaaactcatggattctggtaaccttgttttatatgacgatgaactcatggaagtgaaactgtgggagagctttgaaaatc |
28374 |
T |
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| Q |
201 |
caactgacacattcctacttggaatgaatatggataagaatttgagtctgactagttggaaaggtgctgatgacccaagcagtgg |
285 |
Q |
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| T |
28373 |
caactgacacattcctacttggaatgaatatggataagaatttgagtctgactagttggaaaggtgctgatgacccaagcagtgg |
28289 |
T |
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Target: scaffold0280 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 3667 - 3615
Alignment:
| Q |
102 |
cacctaaaaacaggacagtgaaactcatggattctggtaaccttgtgttatat |
154 |
Q |
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| T |
3667 |
cacctaaaaacaggacggtgaaactcatggattctggtaatcttgtgttatat |
3615 |
T |
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