View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2150_low_12 (Length: 293)
Name: NF2150_low_12
Description: NF2150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2150_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 40222340 - 40222603
Alignment:
| Q |
13 |
gacatcatcgtgtaatttattttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttatttccaaggtagcccatgatgccgg |
112 |
Q |
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| T |
40222340 |
gacatcaacgtgtaatttcttttatactatcaatcaatcataatcgtcagatcatttgacttttaacgaaccttatttccaaggtagcccatgatgccgg |
40222439 |
T |
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| Q |
113 |
taccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccaaccatttgcttgcttgctactag |
212 |
Q |
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| T |
40222440 |
taccaacgcgagacacttttaaattgccaacgtggttgcgataatcggcgcgtacccacacgcacaagaagataccgaccatttgcttgcttgctactag |
40222539 |
T |
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| Q |
213 |
actaaagcgttgcttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagg |
276 |
Q |
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| T |
40222540 |
gctaaagcgtttcttttgatttgggatttcattgtttgaggtgtttagagcttgatgaataagg |
40222603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 39338417 - 39338380
Alignment:
| Q |
31 |
attttatactatcaatcaatcataatcgtcagatcatt |
68 |
Q |
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| T |
39338417 |
attttatactatcaatcaattataatcgtcaaatcatt |
39338380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 4076111 - 4076069
Alignment:
| Q |
26 |
aatttattttatactatcaatcaatcataatcgtcagatcatt |
68 |
Q |
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| T |
4076111 |
aattttttttacactatcaatcaatcataatcgttagatcatt |
4076069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 36886013 - 36886051
Alignment:
| Q |
30 |
tattttatactatcaatcaatcataatcgtcagatcatt |
68 |
Q |
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||||||| ||||||||||||||||||||||||| ||||| |
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| T |
36886013 |
tattttacactatcaatcaatcataatcgtcaggtcatt |
36886051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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