View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2150_low_14 (Length: 259)
Name: NF2150_low_14
Description: NF2150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2150_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 32347137 - 32347390
Alignment:
| Q |
1 |
ggtactatgaatatcaagtggctccactaacacaatatattttgctggataaaaatgtattatttctttaagaccacaagtaggtaaataatagtaggaa |
100 |
Q |
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| T |
32347137 |
ggtactatgaatatcaagtggctccactaacacagtatattttgctggataaaaatgtattatttctttaagaccacaagtaggtaaataatagtaggaa |
32347236 |
T |
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| Q |
101 |
gttagaaaaatattagtcagtatttaaactacagaccaatattacaactttttcctactctagtcaaagtattggcaacaaaaaggaaataggtcgaaac |
200 |
Q |
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| T |
32347237 |
gttagaaaaatattagtcagtatttaaactacagaccaatattacaactttttcctactctagtcaaagtattggcaagaaaaaggaaataggtcgaaac |
32347336 |
T |
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| Q |
201 |
acaaaagaccacaaataacattgtgtaaagttattcaactagagaataatctac |
254 |
Q |
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| T |
32347337 |
acaaaagaccataaataacattgtgtaaagttattcaactagagaataatctac |
32347390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 43156049 - 43156119
Alignment:
| Q |
153 |
tcctactctagtcaaagtattggcaa-caaaaaggaaataggtcgaaacacaaaagaccacaaataacattg |
223 |
Q |
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| T |
43156049 |
tcctactctagttaaattattggcaagcaaaaaggaaataggtcaaaacac-aaagatcacaagtaacattg |
43156119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 47874134 - 47874058
Alignment:
| Q |
144 |
acaactttttcctactctagtcaaagtattggcaa-caaaaaggaaataggtcgaaacacaaaagaccacaaataaca |
220 |
Q |
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| T |
47874134 |
acaagtttttcctactctagtccaatt-ttggcaaacaaaaaggaaataggtagaagcgcaaaagaccacaagtaaca |
47874058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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