View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2150_low_18 (Length: 240)
Name: NF2150_low_18
Description: NF2150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2150_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 5678002 - 5678223
Alignment:
| Q |
19 |
acactgtcatataaagcttttttgcacttttaatcagtcataaaaacatatgtaacatcttgctttcaaattcaagttatatattgagacagaaagnnnn |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678002 |
acactgtcatataaagtttttttgcacttttaatcagtcataaaaacatatgtaacatcttgctttcaaattcaagttatatattgagacagaaagaaaa |
5678101 |
T |
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| Q |
119 |
nnncatgacatgttttgtaacaaataaacattaacaattgattgacaagtgacatcttacaagattaagaaatcattactcttcacttgaatgattcaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678102 |
aaacatgacatgttttgtaacaaataaacattaacaattgattgacaagtgacatcttacaagattaagaaatcattactcttcacttgaatgattcaaa |
5678201 |
T |
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| Q |
219 |
gcaaataagtttgatatatatt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
5678202 |
gcaaataagtttgatatatatt |
5678223 |
T |
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