View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2150_low_3 (Length: 494)
Name: NF2150_low_3
Description: NF2150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2150_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 23266636 - 23266169
Alignment:
| Q |
18 |
gtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23266636 |
gtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggaacccaacacgaagactagaatttggctaggaacttttccaacagcc |
23266537 |
T |
|
| Q |
118 |
gatatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattccag |
217 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23266536 |
gagatggcagcccgagcccacgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagattcggtgtggcggcttcctattccag |
23266437 |
T |
|
| Q |
218 |
caacttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23266436 |
caacttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgt |
23266337 |
T |
|
| Q |
318 |
agctgtcgtcgccacaaaggagttgaatatgttttgtgtggaagaagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcc |
417 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23266336 |
agctgttgtcgccacaaaggagttgaatatgttttgtgtggaagaagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcc |
23266237 |
T |
|
| Q |
418 |
cctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatga |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23266236 |
cctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatga |
23266169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 485
Target Start/End: Complemental strand, 23252104 - 23251635
Alignment:
| Q |
19 |
tatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagctg |
118 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||| | |
|
|
| T |
23252104 |
tatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctaggaacttttccaacagccg |
23252005 |
T |
|
| Q |
119 |
atatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattccagc |
218 |
Q |
| |
|
| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23252004 |
agatggcagcccgagcccacgatgttgccgcgatagcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagc |
23251905 |
T |
|
| Q |
219 |
aacttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgta |
318 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| || |||||| |
|
|
| T |
23251904 |
aacttccgcgataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactttaatgaccagtgacattgacaccgttgta |
23251805 |
T |
|
| Q |
319 |
gctgtcgtcgccacaaaggagttgaatatgttttgtgtggaa---gaagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgt |
415 |
Q |
| |
|
||||| ||||| ||| ||||| ||||||||||| |||| ||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
23251804 |
gctgttgtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaagaggaagtgttgaatatgccagagttgtggaggaatatggcactaatgt |
23251705 |
T |
|
| Q |
416 |
cccctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatga |
485 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
23251704 |
cccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatga |
23251635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 23258081 - 23257608
Alignment:
| Q |
18 |
gtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagct |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| || |||||||| || |||||||||||| | |
|
|
| T |
23258081 |
gtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctggggacttttccaacaccc |
23257982 |
T |
|
| Q |
118 |
gatatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattccag |
217 |
Q |
| |
|
|| ||||||||||||||||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23257981 |
gaaatggcagcccgagcccacgatgttgccgcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccag |
23257882 |
T |
|
| Q |
218 |
caacttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgt |
317 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||| | |||| ||||||||||||||||||||||| ||| ||||||||| | ||||| || || || |
|
|
| T |
23257881 |
caacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattgacaccgtagt |
23257782 |
T |
|
| Q |
318 |
agctgtcgtcgccacaaaggagttgaatatgttttgtgtggaa---gaagaag---aggaaatgttgaatatgccggagttttggaggaatatggcacta |
411 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || || | |||||||||||||||| |
|
|
| T |
23257781 |
acctgtcgtggccacaaaggagttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttgaggaatatggcacta |
23257682 |
T |
|
| Q |
412 |
atgtcccctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatga |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
23257681 |
atgtcccctacacatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatga |
23257608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 485
Target Start/End: Complemental strand, 23247692 - 23247223
Alignment:
| Q |
19 |
tatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagctg |
118 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||| |||||||| ||||||||||||||| | | |
|
|
| T |
23247692 |
tatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctgggaacttttccaacaccgg |
23247593 |
T |
|
| Q |
119 |
atatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattccagc |
218 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
23247592 |
agatggctgcccgagcccacgatgttgctgcaatggcattgaggggccgctatgcctgtctcaatttctcagactcggtgtggcgccttcctattccagc |
23247493 |
T |
|
| Q |
219 |
aacttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgta |
318 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || ||| ||||| ||| | ||| |
|
|
| T |
23247492 |
aacttccgcaataaaagatattcaaaaggcagctacaaaagcggccgaagcttttagaccagacaatactttaatgactaacaatattgacactatcgta |
23247393 |
T |
|
| Q |
319 |
gctgtcgtcgccacaaaggagttgaatatgttttgtgtggaa------gaagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaa |
412 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||||||| ||||| |||||||||||||| | | |
|
|
| T |
23247392 |
gatgtcgtcgccacaaaggagctgaatatgttttgtgtggaagttgatgaacaggaggaaatgttgaatatgccagagttgtggaggaatatggcgttga |
23247293 |
T |
|
| Q |
413 |
tgtcccctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatga |
485 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | ||||| ||| ||||| | ||||| |||||||||||||| |
|
|
| T |
23247292 |
tgtcacctacacatagctttgagtatcatg---agtatgacgatattcatgtacaagattttcaagatgatga |
23247223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 23283754 - 23283439
Alignment:
| Q |
18 |
gtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagct |
117 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
23283754 |
gtataggggtgtgaggaagaggaacttagataaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggct |
23283655 |
T |
|
| Q |
118 |
gatatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattccag |
217 |
Q |
| |
|
|| ||||| || ||||| || || ||||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||| | |
|
|
| T |
23283654 |
gagatggctgcacgagcacacgacgttgcagccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctg |
23283555 |
T |
|
| Q |
218 |
caacttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgt |
317 |
Q |
| |
|
| | | | |||||| ||||||| ||||||| || |||||||||| ||||| ||||||||||| ||| |||||| || | ||||||| || ||||| |
|
|
| T |
23283554 |
cctccgctgaagcaaaagacattcaaagggcagctgcagaagccgccgaggctttcagaccagacaagactttaatgactaacgacattgacaccgttgt |
23283455 |
T |
|
| Q |
318 |
agctgtcgtcgccaca |
333 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
23283454 |
ggctgtcgtcgtcaca |
23283439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 23587222 - 23586957
Alignment:
| Q |
19 |
tatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagctg |
118 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| || | |
|
|
| T |
23587222 |
tatagaggagtgaggaagaggaacttagataaatgggtttgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaactgccg |
23587123 |
T |
|
| Q |
119 |
atatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattccagc |
218 |
Q |
| |
|
| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| | ||||||||| || | || || |
|
|
| T |
23587122 |
agatggcagcccgtgcccacgatgttgctgcaatggcattgaggggccgctacgcttgtctcaactttgcagactcagcgtggcggctccccaaacctgc |
23587023 |
T |
|
| Q |
219 |
aacttcctcaa-taaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaa |
284 |
Q |
| |
|
||| | ||||| ||| ||||| |||||||| |||||| | |||||||| ||||| ||||||||||| |
|
|
| T |
23587022 |
aac-tactcaagcaaaggatatacaaaaggctgctacagaggccgccgaggctttcagaccagacaa |
23586957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 23290067 - 23289629
Alignment:
| Q |
18 |
gtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagct |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| || || | ||||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
23290067 |
gtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagcc |
23289968 |
T |
|
| Q |
118 |
gatatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattccag |
217 |
Q |
| |
|
|| ||||| ||||| || || || ||||| || || ||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||||||||| | |
|
|
| T |
23289967 |
gagatggctgcccgtgcacacgacgttgcagcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaagcttcctattcctg |
23289868 |
T |
|
| Q |
218 |
caacttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaatactataatgattaccaacattgagactgttgt |
317 |
Q |
| |
|
| | | | |||||| ||||||| ||||||| | ||||||| || ||||| ||||||||||| ||| |||||| ||| |||||| || ||||| |
|
|
| T |
23289867 |
cctccgctgaagcaaaagacattcaaagggcagctggagaagccgctgaggctttcagaccagacaagactttaatgactactggcattgacacggttgt |
23289768 |
T |
|
| Q |
318 |
agctgtcgtcgccac---------aaagga------gttgaatatgttttgtgtggaag------aagaagaggaaatgttgaatatgccggagttttgg |
396 |
Q |
| |
|
||||| |||| | | |||| ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||| |
|
|
| T |
23289767 |
ggctgttgtcgttgcggtggaagaagaggaagaagtgttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtgg |
23289668 |
T |
|
| Q |
397 |
aggaatatggcactaatgtcccctacacatagctttgag |
435 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23289667 |
aaaaatatggcactaatgtcccctacacatagttttgag |
23289629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 23391535 - 23391342
Alignment:
| Q |
19 |
tatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagctg |
118 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||||||||| |||||||||||||| || || | |||||||| |||||||||||| ||||||||||| || | |
|
|
| T |
23391535 |
tataggggtgtgaggaaaagaaacttagataaatgggtgtgtgaaatgagggaaccaaataagaagactaaaatttggctaggcacttttccaactgcgg |
23391436 |
T |
|
| Q |
119 |
atatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctat |
212 |
Q |
| |
|
| |||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| | ||||||||| ||||| |
|
|
| T |
23391435 |
agatggcagcccgagcacatgatgttgccgcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctat |
23391342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 23583338 - 23583164
Alignment:
| Q |
19 |
tatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagctg |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||||| || | |
|
|
| T |
23583338 |
tataggggtgtaaggaagaggaacttagataaatgggtttgtgaaatgaggaagcctaacaagaagactaagatttggctagggacttttccaactgcgg |
23583239 |
T |
|
| Q |
119 |
atatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactc |
194 |
Q |
| |
|
| |||||| |||| ||||| ||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
23583238 |
agatggcaacccgtgcccacgatgttgctgcaatggcattga-gggccgctacgcctgtctcaactttgcagactc |
23583164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 25 - 284
Target Start/End: Complemental strand, 23634250 - 23633991
Alignment:
| Q |
25 |
ggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagctgatatgg |
124 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| || || |||| |
|
|
| T |
23634250 |
ggtgtgaggaggaggaacttagataaatgggtgtgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaacggccgagatgg |
23634151 |
T |
|
| Q |
125 |
cagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattccagcaacttc |
224 |
Q |
| |
|
|||| ||||| |||||||| || || ||||||| || |||||| |||||||||| |||||||| ||||| | | ||||||||||||||| || ||| | |
|
|
| T |
23634150 |
cagcacgagcacatgatgtcgcggcattggcattaagaggtcgcaacgcctgtcttaattttgctgactctgcctcgcggcttcctattcctgccactac |
23634051 |
T |
|
| Q |
225 |
ctcaataaaagatattcaaaaggcagctacaaaagccgccgaagcttttagaccagacaa |
284 |
Q |
| |
|
| || |||||| |||||| | ||| || |||| ||||| ||||| ||||||||||| |
|
|
| T |
23634050 |
agagacaagagatatacaaaagacggctgcagaagctgccgaggctttcagaccagacaa |
23633991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 23507077 - 23506899
Alignment:
| Q |
18 |
gtatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagct |
117 |
Q |
| |
|
|||||| ||||| |||| |||||| ||||||||||||| |||||||| || |||| |||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
23507077 |
gtataggggtgtgaggagtaggaacctagataaatgggtgtgtgaaataagacagcctaacaaaaagaccaagatttggctaggaacttttccaacagcc |
23506978 |
T |
|
| Q |
118 |
gatatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcgg |
196 |
Q |
| |
|
|| |||||||| || |||||||||||||| || |||| |||| ||| || ||||||||||||| ||||||||||||| |
|
|
| T |
23506977 |
gagatggcagctcgggcccatgatgttgcggcactggcgttgaaaggtggcgacgcctgtctcaactttgcagactcgg |
23506899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 23594288 - 23594092
Alignment:
| Q |
19 |
tatagaggtgtaaggaagaggaacttagataaatgggtttgtgaaatgagggagcccaacacgaagactagaatttggctaggaacttttccaacagctg |
118 |
Q |
| |
|
||||| ||||| |||| ||||| |||| ||||||||| ||||||||||||||||| |||| || ||||| || ||||||||||||||||||| |||| |
|
|
| T |
23594288 |
tataggggtgtgaggagtaggaatttaggtaaatgggtgtgtgaaatgagggagcctaacaagatgactaagatatggctaggaacttttccaatggctg |
23594189 |
T |
|
| Q |
119 |
atatggcagcccgagcccatgatgttgctgcgatggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattcc |
215 |
Q |
| |
|
| |||| ||| |||||||||||||| || | |||||||||| ||| | ||||| |||||||| ||||||||||| | |||||||| | |||||| |
|
|
| T |
23594188 |
agatggaagcacgagcccatgatgtcgcgacattggcattgagaggttgttacgcttgtctcaactttgcagactctgcatggcggctccttattcc |
23594092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 480
Target Start/End: Complemental strand, 23391174 - 23391074
Alignment:
| Q |
377 |
tgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttca |
476 |
Q |
| |
|
|||| ||||| ||||| | ||||||||||||||||||||| ||||||||||||| || |||| ||| |||||||| || ||||| ||||||||||||| |
|
|
| T |
23391174 |
tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatg---aatatgaaaatattcatgttcaagactttca |
23391078 |
T |
|
| Q |
477 |
agat |
480 |
Q |
| |
|
|||| |
|
|
| T |
23391077 |
agat |
23391074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 428
Target Start/End: Complemental strand, 23283391 - 23283296
Alignment:
| Q |
339 |
gttgaatatgttttgtgtggaag------aagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatag |
428 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||| | ||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
23283391 |
gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatag |
23283296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 23633908 - 23633835
Alignment:
| Q |
358 |
gaagaagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctt |
431 |
Q |
| |
|
||||||||||||||| |||||| || || |||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23633908 |
gaagaagaagaggaagagttgaacattcctgagtcattgaggaatatggctctaatgtcccctacacatagctt |
23633835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 23506781 - 23506718
Alignment:
| Q |
152 |
tggcattgaggggtcgctacgcctgtctcaattttgcagactcggtgtggcggcttcctattcc |
215 |
Q |
| |
|
||||||| || |||||| ||||||||||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
23506781 |
tggcattaagaggtcgcaacgcctgtctcaactttgcagactcggcctcgcggcttcctattcc |
23506718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 431
Target Start/End: Complemental strand, 23506566 - 23506493
Alignment:
| Q |
358 |
gaagaagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctt |
431 |
Q |
| |
|
||||||||||||||| |||||| || || |||| | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23506566 |
gaagaagaagaggaagagttgaacattcctgagtcattgaggaatatggttctaatgtcccctacacatagctt |
23506493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 23593082 - 23593009
Alignment:
| Q |
362 |
aagaagaggaaatgttgaatatgccggagttttggaggaatatggcactaatgtcccctacacatagctttgag |
435 |
Q |
| |
|
|||| |||||| ||||||| || || |||| | |||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
23593082 |
aagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagcgttgag |
23593009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 3996443 - 3996385
Alignment:
| Q |
88 |
agaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgc |
146 |
Q |
| |
|
|||||||||||||| |||| ||||||| | || |||||||| ||||||||||| ||||| |
|
|
| T |
3996443 |
agaatttggctaggcacttatccaacacccgagatggcagctcgagcccatgacgttgc |
3996385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 41521739 - 41521800
Alignment:
| Q |
88 |
agaatttggctaggaacttttccaacagctgatatggcagcccgagcccatgatgttgctgc |
149 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| || |||| |||||||| ||||| |
|
|
| T |
41521739 |
agaatttggctcggaacttttccaactcctgatatggctgctagagctcatgatgtggctgc |
41521800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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