View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2150_low_7 (Length: 385)
Name: NF2150_low_7
Description: NF2150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2150_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 24859579 - 24859230
Alignment:
| Q |
15 |
tcagaattcagattgtattagaggggtttcagatggaacagttagggtgtagtagtaatcttataatttgcttaacttgtgttgtactgctttacttttt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24859579 |
tcagaattcagattgtattagaggggtttcagatggaacagttagggtgtagtagtaatcttataatttgcttaacttgtgttgtactgctttaattttt |
24859480 |
T |
|
| Q |
115 |
atattttgtgggtaaatattttagttcttcagagctttattgtagtagtagcagcagcaatgaattaacattaattgtaagttacttgtgttgtgttaca |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24859479 |
ataatttgtgggtaaatattttagttcttcagagctttattgtagtagtagcagca---atgaattaacattaattgtaagttacttgtgttgtgttaca |
24859383 |
T |
|
| Q |
215 |
acttaatgtgtatgaatgatccatattttgtagttttgtgttaaattgattagatttaataaacatacacgattagtgtaaagatattttgcactttcaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24859382 |
acttaatgtgtatgaatgatccatattttgtagtattgtgttaaattgattagatttaataaacatacacgattagtgtaaagatattttgcactttcaa |
24859283 |
T |
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| Q |
315 |
tatgataatacaatatgggacattgctttcaatttctctcgtatggtcaatct |
367 |
Q |
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| T |
24859282 |
tatgataatacaatatgggacattgctttcaatttctctcgtatggtcaatct |
24859230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 1082027 - 1082077
Alignment:
| Q |
15 |
tcagaattcagattgtattagaggggtttcagatggaacagttagggtgta |
65 |
Q |
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| T |
1082027 |
tcagaattcagattctattagaggggtttcagatggaacagttaggatgta |
1082077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 24919170 - 24919220
Alignment:
| Q |
15 |
tcagaattcagattgtattagaggggtttcagatggaacagttagggtgta |
65 |
Q |
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|||| ||||||||| |||||||||||||| |||||||||||||||| |||| |
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| T |
24919170 |
tcagtattcagattctattagaggggttttagatggaacagttaggatgta |
24919220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 15341157 - 15341202
Alignment:
| Q |
15 |
tcagaattcagattgtattagaggggtttcagatggaacagttagg |
60 |
Q |
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|||| ||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
15341157 |
tcagtattcagattctattagaggagtttcagatggaacagttagg |
15341202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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