View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2150_low_8 (Length: 370)
Name: NF2150_low_8
Description: NF2150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2150_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 38364131 - 38363792
Alignment:
| Q |
16 |
atgagatgccactaaaagggtcttttgatatgatttataccaaagttataggannnnnnnatggctaaaaggaatagaagttgctcaaacgtgcatcaag |
115 |
Q |
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| T |
38364131 |
atgaaatgccactaaaagggtcttttgatatgatatataccaaagttataagatttttttatagctaaaaggaatagaagttgctcaaacgtgcattaag |
38364032 |
T |
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| Q |
116 |
gcatcgtggtcagtggtcatatactttaattcgtgtcaattatattaacaaatatggccatcgccagtgtgtacaattccaaatattgtggatatgtccc |
215 |
Q |
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| T |
38364031 |
gcatcgtggtcactggtcatatactttaattcgtgtcaattgtagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcac |
38363932 |
T |
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| Q |
216 |
t------cgaaatcacgtgcaatgccacttttgaaatatccttttattt-tatttatctatcatatgctatatccagagtgttatcctcatataatggtg |
308 |
Q |
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| T |
38363931 |
ttgaaatcgaaatcacgtgcaatgccacttttgaaatatccttttatatatctatatctatcatatgctatatccagagtgttatcctcatataatggtg |
38363832 |
T |
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| Q |
309 |
cctattggtaatcaatattcctcttggtgttccttttcct |
348 |
Q |
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| T |
38363831 |
cctattggtaatcaatattcctcttggtgttccttttcct |
38363792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 38370603 - 38370280
Alignment:
| Q |
11 |
agaatatgagatgccactaaaagggtcttttgatatgatttataccaaagttataggannnnnnnatggctaaaaggaatagaagttgctcaaacgtgca |
110 |
Q |
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| T |
38370603 |
agaaaatgagatgccattaaaagggtcttttgatatgatatataccaaagttataggatttttttatggctaaaaggaatagaagttgctcaaacgtgca |
38370504 |
T |
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| Q |
111 |
tcaaggcatcgtggtcagtggtcatatactttaattcgtgtcaattatattaacaaatatggccatcgccagtgtgtacaattccaaatattgtggatat |
210 |
Q |
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| T |
38370503 |
ctaaggcatcgtggtcactggtcatatactttaattcgtgtcaattgtagtaacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatat |
38370404 |
T |
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| Q |
211 |
gtccc------tcgaaatcacgtgcaatgccacttttgaaatatccttttattttatttatctatcatatgctatatccagagtgttatcctcatataat |
304 |
Q |
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| T |
38370403 |
gtcacttgaaatcgaaatcacgtgcaatgccacttttgaaatatcctttt-ttctatct-------atatgctatatccagagtgttatcctcatataac |
38370312 |
T |
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| Q |
305 |
ggtgcctattggtaatcaatattcctcttggt |
336 |
Q |
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| T |
38370311 |
ggtgcctattggtaatcaatattgctcttggt |
38370280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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