View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21510_high_10 (Length: 323)
Name: NF21510_high_10
Description: NF21510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21510_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 16487458 - 16487282
Alignment:
| Q |
1 |
aaagtatccttgttccagactttgagcttctctttaagagttttcagcttctttgttaatatgtacatggggcatccaatgacaggagtttgccatgaag |
100 |
Q |
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| T |
16487458 |
aaagtatccttgttccagactttgagcttctctttaagagttttcagcttctttgttaatatgtacatagggcatccaatgacaggagtttggcatgaag |
16487359 |
T |
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| Q |
101 |
atgcaataaactctttacaatcatcatgaagagcccacatcttcaaaaacttgaaactggatgcaaaagagttgtca |
177 |
Q |
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| T |
16487358 |
atgcaataaactctttacaatcatcatgaagagcccacatcttcaaaaacttgaaactagatgcaaaagagttgtca |
16487282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 9173244 - 9173383
Alignment:
| Q |
182 |
tgtattgctgcttcatatattattgtttagggtgccgttcatgtgcctgacacgtatctgtgtcagacataggcacatgtagttacgtttggtttctatg |
281 |
Q |
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| T |
9173244 |
tgtattgctgcttcatatattattgtttagggtgccgttcatgtgcctgacacatatctgtgccagacataggcgcatgtagttacgtttggtttctatg |
9173343 |
T |
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| Q |
282 |
tgtcaatgtcatatccggtatatgtgtctgtggtgctgct |
321 |
Q |
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| T |
9173344 |
tgtcaatgtcatatccggtatatgtgtccgtgttgctgct |
9173383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 182 - 321
Target Start/End: Complemental strand, 8653028 - 8652889
Alignment:
| Q |
182 |
tgtattgctgcttcatatattattgtttagggtgccgttcatgtgcctgacacgtatctgtgtcagacataggcacatgtagttacgtttggtttctatg |
281 |
Q |
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| T |
8653028 |
tgtattgctgcttcatagattattgtgtaggatgccgttccggtgcctgacacgtatttgtgtcagacacaagcacatgtagttacgtttggtttctatg |
8652929 |
T |
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| Q |
282 |
tgtcaatgtcatatccggtatatgtgtctgtggtgctgct |
321 |
Q |
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| T |
8652928 |
tgtcagtgtcatatccggtatatgtgtctttgttgctgct |
8652889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 28713826 - 28713745
Alignment:
| Q |
1 |
aaagtatccttgttccagactttgagcttctctttaagagttttcagcttctttgttaatatgtacatggggcatccaatga |
82 |
Q |
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| T |
28713826 |
aaagtatccttgttccagactttgagcttctctttaagagttttcaacttctttgttaatatgtacatggggcatccaatga |
28713745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 8653082 - 8653017
Alignment:
| Q |
256 |
acatgtagttacgtttggtttctatgtgtcaatgtcatatccggtatatgtgtctgtggtgctgct |
321 |
Q |
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| T |
8653082 |
acatgtagttacctttggtatctatgtgtcagtgtcatatccagtatatgtatctgtattgctgct |
8653017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 9173189 - 9173237
Alignment:
| Q |
255 |
cacatgtagttacgtttggtttctatgtgtcaatgtcatatccggtata |
303 |
Q |
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| T |
9173189 |
cacatgtagttacctttggtatctacgtgtcagtgtcatatccggtata |
9173237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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