View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21510_high_11 (Length: 323)
Name: NF21510_high_11
Description: NF21510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21510_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 1653734 - 1653414
Alignment:
| Q |
1 |
acatagaacaaaccaacgcacatctgagagaccaaggcgaaagctttctttgataatgcgagaaatccggaggccagaagggtgacctatgggattagtg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1653734 |
acataggacaaaccaacgcacatctgagagaccaaggcgaaagctttctttgataatgcgagaaatccggaggccagaagggtgacctatgggattagtg |
1653635 |
T |
|
| Q |
101 |
taacggaagtacgaaatgtctccagaaatcatggtagggggtaataactcatctccatgttcttcaaccactttttcctctaaccagacatggccacgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1653634 |
taacggaagtacgaaatgtctccagaaatcatggtagggggtaataactcatctccatgttcttcaaccactttttcctctaaccacacatggccacgca |
1653535 |
T |
|
| Q |
201 |
tgtcattgggacgccaccatagtctaatatattccttcctccgtttccaaagctgagatgatccagctatgccaaaaacaatatgttgaactgacaaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1653534 |
tgtcattgggacgccaccatagtctaatatattccttcctccgtttccaaagctgagatgatccagctatgccaaaaacaatatgttgaactgacaaacc |
1653435 |
T |
|
| Q |
301 |
ttcttgttctgtgatcctgct |
321 |
Q |
| |
|
||||||||||| ||| ||||| |
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| T |
1653434 |
ttcttgttctgcgatactgct |
1653414 |
T |
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