View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21510_high_12 (Length: 320)
Name: NF21510_high_12
Description: NF21510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21510_high_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 45320820 - 45321131
Alignment:
| Q |
9 |
agcagagaaggccgggtttggacatcagttaaaggtataaaatagaaacagtgtagtcatagaaggnnnnnnnnnnnncaatacctgcaagagtctcgat |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45320820 |
agcagagaaggctgggtttggacatcagttaaaggtataaaatagaaacagtgtagtcatagaaggaaaaagaaaaaacaatacctgcaagagtctcgat |
45320919 |
T |
|
| Q |
109 |
agcaatacaaacgttttccttctcacaagctcacaaggatctaagagacaccttgtgatcttgtttatgtaactggtggcttcaatgaaaaaataagtta |
208 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45320920 |
agcaatacgaacgtttgccttctcacaagctcacaaggatctaagagacaccttgtgatcttggttatgtaactggtagcttcaatgaaaaaataagtta |
45321019 |
T |
|
| Q |
209 |
gcaaagagagtatttacttgacataattgaatatatagattccgcataacgtgaacattagactccttccccagcatgaagtaataattctcctcagtat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45321020 |
gcaaagagagtatttacttgacataattgaatatataaattccgcataacgtgaacattagacttcttccccagcatgaagtaataattctcctcagtat |
45321119 |
T |
|
| Q |
309 |
atataatacttg |
320 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45321120 |
atataatacttg |
45321131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 39 - 312
Target Start/End: Original strand, 14235830 - 14236101
Alignment:
| Q |
39 |
aaaggtataaaatagaaacagtgtagtcatagaaggnnnnnnnnnnnncaatacctgcaagagtctcgatagcaatacaaacgttttccttctcacaagc |
138 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| |||||||||||| |||||||||||||||| || |||| |||||||||||| |
|
|
| T |
14235830 |
aaaggtatgaaatagaatcagtgtagtcatagaaggaaaaagacaaaacaatacctgcaacagtctcgatagcaatatgaatgtttgccttctcacaagt |
14235929 |
T |
|
| Q |
139 |
tcacaaggatctaagagacaccttgtgatcttgtttatgtaactggtggcttcaatgaaaaaataagttagcaaagagagtatttacttgacataattga |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||| |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
14235930 |
tcacaaggatctaagagacaccttgtgatcttggttatgtaactggtagcttcaa--agaaattaagttagcaaagagaatatttacttgacattattga |
14236027 |
T |
|
| Q |
239 |
atatatagattccgcataacgtgaacattagactccttccccagcatgaagtaataattctcctcagtatatat |
312 |
Q |
| |
|
| |||| ||||||||||| ||||||||| |||| ||||| |||||| |||||||||||||||||||| ||||| |
|
|
| T |
14236028 |
ctgtataaattccgcataatgtgaacattggacttcttcctcagcataaagtaataattctcctcagtttatat |
14236101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University