View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21510_high_13 (Length: 319)
Name: NF21510_high_13
Description: NF21510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21510_high_13 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0045 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 34837648 - 34837958
Alignment:
| Q |
9 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34837648 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
34837747 |
T |
|
| Q |
109 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34837748 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
34837847 |
T |
|
| Q |
209 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
34837848 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcacgaatgaagttgcccaccgctgtacatgaggaactc |
34837947 |
T |
|
| Q |
309 |
cggaaccccgt |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
34837948 |
cggaaccccgt |
34837958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 2161426 - 2161116
Alignment:
| Q |
9 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2161426 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaaatttatccttcacaatgttagacctaacagccacttgtccgattgca |
2161327 |
T |
|
| Q |
109 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2161326 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
2161227 |
T |
|
| Q |
209 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactc |
308 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
2161226 |
aaaaagtgaaccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcacgaatgaagttgcccaccgctgtacatgaggaactc |
2161127 |
T |
|
| Q |
309 |
cggaaccccgt |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
2161126 |
cggaaccccgt |
2161116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 4714934 - 4715244
Alignment:
| Q |
9 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4714934 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
4715033 |
T |
|
| Q |
109 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715034 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
4715133 |
T |
|
| Q |
209 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
4715134 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcacgaatgaagttgcccatcgctgtacatgaggaactc |
4715233 |
T |
|
| Q |
309 |
cggaaccccgt |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
4715234 |
cggaaccccgt |
4715244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 4734740 - 4735050
Alignment:
| Q |
9 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4734740 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
4734839 |
T |
|
| Q |
109 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4734840 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
4734939 |
T |
|
| Q |
209 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
4734940 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcacgaatgaagttgcccatcgctgtacatgaggaactc |
4735039 |
T |
|
| Q |
309 |
cggaaccccgt |
319 |
Q |
| |
|
||||| ||||| |
|
|
| T |
4735040 |
cggaatcccgt |
4735050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 4709324 - 4709634
Alignment:
| Q |
9 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709324 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
4709423 |
T |
|
| Q |
109 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709424 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggtttacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
4709523 |
T |
|
| Q |
209 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
4709524 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcacgaatgaagttgcccatcgctgtacatgaggaactc |
4709623 |
T |
|
| Q |
309 |
cggaaccccgt |
319 |
Q |
| |
|
||||| ||||| |
|
|
| T |
4709624 |
cggaatcccgt |
4709634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 7066080 - 7066390
Alignment:
| Q |
9 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7066080 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcttgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
7066179 |
T |
|
| Q |
109 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7066180 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcaccctccaagg |
7066279 |
T |
|
| Q |
209 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
7066280 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcacgaatgaagttgcccatcgctgtacatgaggaactc |
7066379 |
T |
|
| Q |
309 |
cggaaccccgt |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
7066380 |
cggaaccccgt |
7066390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 4023033 - 4023343
Alignment:
| Q |
9 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4023033 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcttgaagtttatccttcacaatgtcagacctaacaaccacttgtccgattgca |
4023132 |
T |
|
| Q |
109 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4023133 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcaccctccaagg |
4023232 |
T |
|
| Q |
209 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
4023233 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcacgaatgaagttgcccatcgctgtacatgaggaactc |
4023332 |
T |
|
| Q |
309 |
cggaaccccgt |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
4023333 |
cggaaccccgt |
4023343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 8189289 - 8189599
Alignment:
| Q |
9 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189289 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctaaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
8189388 |
T |
|
| Q |
109 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189389 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
8189488 |
T |
|
| Q |
209 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
8189489 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcacgaatgaagttgcccatcgctgtacatgaggaactc |
8189588 |
T |
|
| Q |
309 |
cggaaccccgt |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
8189589 |
cggaaccccgt |
8189599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 56 - 319
Target Start/End: Complemental strand, 14291490 - 14291227
Alignment:
| Q |
56 |
cctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtggatgtatgcccactcatatactacattctcaagggcttcaag |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291490 |
cctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtggatgtatgcccactcatatactacattctcaagggcttcaag |
14291391 |
T |
|
| Q |
156 |
gttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgg |
255 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14291390 |
gttaacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgg |
14291291 |
T |
|
| Q |
256 |
gcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactccggaaccccgt |
319 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14291290 |
gcttgattaaagattcacgaatgaagttgcccaccgctgtacatgaggaactccggaaccccgt |
14291227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 15944882 - 15944581
Alignment:
| Q |
16 |
gagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
15944882 |
gagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcaaacctaacagccacttgtctgattgcactgtgga |
15944783 |
T |
|
| Q |
116 |
tgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagt |
215 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15944782 |
tgtatgcccactaatctactacattctcaagggcatcaaggtcgacatagcccgcacaatagcatgggagttaaggctggtcacccttcaaggaaaaggt |
15944683 |
T |
|
| Q |
216 |
gagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactccggaacc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||| || | ||||||| |
|
|
| T |
15944682 |
gagccaaaaacccgcctagcttttcccggactcatcatgggcttgattaaagattcacgtatgaagatgcccaccgctgtacatgagaaaattcggaacc |
15944583 |
T |
|
| Q |
316 |
cc |
317 |
Q |
| |
|
|| |
|
|
| T |
15944582 |
cc |
15944581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 48 - 257
Target Start/End: Complemental strand, 22855215 - 22855006
Alignment:
| Q |
48 |
aaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtggatgtatgcccactcatatactacattctcaagg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
22855215 |
aaattcatcctgaagtttatccttcacaatgtcaaacccaacagccacttgtccgattgtatcgtggatgtatgcccactaatctactacattctcaagg |
22855116 |
T |
|
| Q |
148 |
gcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagtgagccaaaaacccgcctagcttttcctggact |
247 |
Q |
| |
|
|| |||| || |||||||||| ||| | || ||||| || | ||| ||||| |||||||||||| |||| |||||||||||||| ||||| || ||||| |
|
|
| T |
22855115 |
gcatcaaagtcgacatagcccacactattgcttgggaattgaagcttgtcacacttcaaggaaaaggtgaaccaaaaacccgcctcgctttccccggact |
22855016 |
T |
|
| Q |
248 |
catcatgggc |
257 |
Q |
| |
|
||| |||||| |
|
|
| T |
22855015 |
cattatgggc |
22855006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 9573375 - 9573682
Alignment:
| Q |
9 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9573375 |
catcacagagcacaatataaactcatgaacaaaacttgcaaattcatcctaaagtttatccttcacaatgtcagacctaacagccacttgtccgattgca |
9573474 |
T |
|
| Q |
109 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9573475 |
ctgtggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaagg |
9573574 |
T |
|
| Q |
209 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
9573575 |
aaaaagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcacgaatgaagtttcccaccgctgtacatgaggaactc |
9573674 |
T |
|
| Q |
309 |
cggaaccc |
316 |
Q |
| |
|
|||||||| |
|
|
| T |
9573675 |
cggaaccc |
9573682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 45019606 - 45019299
Alignment:
| Q |
12 |
cacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45019606 |
cacagagcacaatataaactcatgaacaaaacttgcaaattcatcctgaaatttatccttcacaatgtcagacctaacagccacttgtccgattgcaccg |
45019507 |
T |
|
| Q |
112 |
tggatgtatgcccactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaa |
211 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45019506 |
tggatgtatgcccactaatctattacattctcaagggcatcaaggttgacatagcccgcacaatagcatgggaattaaggctggtcacccttcaaggaaa |
45019407 |
T |
|
| Q |
212 |
aagtgagccaaaaacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactccgg |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||| ||||||||| ||||| |
|
|
| T |
45019406 |
aagtgagccacaaacccgcctagcttttcctggactcatcatgggcttaattaaagattcacgaatgaagatgcccaccgctgtgcatgaggaaatccgg |
45019307 |
T |
|
| Q |
312 |
aaccccgt |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
45019306 |
aaccccgt |
45019299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 317
Target Start/End: Original strand, 5534 - 5827
Alignment:
| Q |
24 |
tataaactcatgaacaaaacttgcaaattcatcctgaagtttatccttcacaatgtcagacctaacagccacttgtccgattgcactgtggatgtatgcc |
123 |
Q |
| |
|
|||||| | |||||||| || | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
5534 |
tataaatttatgaacaacacctccaaattcatcctgaagtttatccttcacaatgtcaaacccaacagccacttgtccgattgtaccgtggatgtatgcc |
5633 |
T |
|
| Q |
124 |
cactcatatactacattctcaagggcttcaaggttgacatagcccgcacattagcatgggagttaaggctggtcacccttcaaggaaaaagtgagccaaa |
223 |
Q |
| |
|
|| | || |||||||||||||||||| |||| || |||||||||| ||| | || ||||| || | | |||||| |||||||||||| | || ||||| |
|
|
| T |
5634 |
cattaatctactacattctcaagggcatcaaagtcgacatagcccacactattgcttgggaattgaagttggtcagacttcaaggaaaaggcgaaccaaa |
5733 |
T |
|
| Q |
224 |
aacccgcctagcttttcctggactcatcatgggcttgattaaagattcaagaatgaagttgcccacagctgtacatgaggaactccggaacccc |
317 |
Q |
| |
|
|||| |||| ||||| || |||||||| ||||||||||| || ||| || |||||||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5734 |
aacctgcctcgctttccccggactcattatgggcttgatcaaggatacacgaatgaagatgcccactgctgtacatgaggaaatccggaacccc |
5827 |
T |
|
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