View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21510_high_2 (Length: 482)
Name: NF21510_high_2
Description: NF21510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21510_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 42335683 - 42336154
Alignment:
| Q |
1 |
aacagtagaaacagtgttctttgaagtgagcgagtgttttaccggtattattccttgtctcctttatccttccaacagagaagcatgactatgcatcttc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42335683 |
aacagtagaaacagtgttctttgaagtgagtgagtgttttaccggtattattccttgtctcctttatccttccaacagagaagcatgactatgcatcttc |
42335782 |
T |
|
| Q |
101 |
gaataatgtaaaactttgctctcttctccttcaaaactcttccttttggtggctgcttttctgaagatgtagaaggttccatattcttacnnnnnnnatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
42335783 |
gaataatgtaaaactttgctctcttctccttcaaaactcttccttttggtagctgcttttctgaagatgtagaaggttccatattcttgctttttttatt |
42335882 |
T |
|
| Q |
201 |
cccagttgggattcttcctttgagtcaagcaagcacaagagtgcgtataaggaatatttcagtttatgtatgttgagttggtaagagttaatacacaaat |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42335883 |
accagttgggattcttcctttgagtcaatcaagcacaagagtgtgtataaggaatatttcagtttatgtatgttgagttggtaagagttaatacacaaat |
42335982 |
T |
|
| Q |
301 |
tatggttgaggttgaataataatgaagatggtgatagtaacggcaatatagtaaggaattgaagtttgtttactttggtcaaacatagagctgagtttgt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42335983 |
tatggttgaggttgaataataatgaagatggtgatagtaacggcaatatagtaaggaattgaagtttgtttactttggtcaaacatagagctgagtttgt |
42336082 |
T |
|
| Q |
401 |
gctttgagtagtggtctttggcatctctggtctaacgtccggaatcccaggactgatgtcttctgttctgtg |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336083 |
gctttgagtagtggtctttggcatctctggtctaacgtccggaatcccaggactgatgtcttctgttctgtg |
42336154 |
T |
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