View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21510_high_3 (Length: 360)
Name: NF21510_high_3
Description: NF21510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21510_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 357
Target Start/End: Complemental strand, 19102727 - 19102372
Alignment:
| Q |
2 |
acaaccggaatggctgcattgtcaatagattgatgttcttctgccacctccaatggcacaacttcatgagtaatgggcgcaacagtggctgcctgttgtg |
101 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
19102727 |
acaatcggaatggcagcattgtcaatagattgatgttcttctgccacctccaatggcacaacttcatgagtaatgggcgcaacagtggatgcctattgtg |
19102628 |
T |
|
| Q |
102 |
gtgtctgttgttgcgtggtttccgggggaggtgggctgtttgtatgctccaagtgctgcgttgtatctccttcaatggtgtcgaaccccaaattttgatg |
201 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19102627 |
gtgtctgttgttgcatggtttccgggggaggtgggctgtttgtatgctccaagtgctgcgttgtatctccttcaatggtgtcggaccccaaattttgatg |
19102528 |
T |
|
| Q |
202 |
ttcagatggtacattcacagtggccgagggtgattgctcatccactgcaataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgta |
301 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
19102527 |
ttcagatggtacattcacagtgcccgagggtgattgctcatccactgcaataatttcgtgattcactgcctcttgtggaatatccttttgctgtaccgta |
19102428 |
T |
|
| Q |
302 |
atggtatgtgcctctgcttcagtaattactgggtccttatttgtctgtggtgctgc |
357 |
Q |
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| T |
19102427 |
atggtatgtgcctctgcttcagtaattactgggtccttatttgtctaaggtgctgc |
19102372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 2 - 330
Target Start/End: Original strand, 36030777 - 36031105
Alignment:
| Q |
2 |
acaaccggaatggctgcattgtcaatagattgatgttcttctgccacctccaatggcacaacttcatgagtaatgggcgcaacagtggctgcctgttgtg |
101 |
Q |
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| T |
36030777 |
acaaccggaatggcaacattgtcaatagattgatgtacttctgccacctccaacaacacaacttcatgaggaataggcgcagcagtggcttcttgttgtg |
36030876 |
T |
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| Q |
102 |
gtgtctgttgttgcgtggtttccgggggaggtgggctgtttgtatgctccaagtgctgcgttgtatctccttcaatggtgtcgaaccccaaattttgatg |
201 |
Q |
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|||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |
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| T |
36030877 |
gtgtctattgttgcgtggtttccgagggaggtgggttgtttgtatgctccaagtgatgtgttgtatctccttcaatggtgtcggaccccaaattttgatg |
36030976 |
T |
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| Q |
202 |
ttcagatggtacattcacagtggccgagggtgattgctcatccactgcaataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgta |
301 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||||||| | || |||| |||| |
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| T |
36030977 |
ttcagatggtaccttcacagtggccgagggtgattgctcctccactgcaataattccgtgattcactgcctcctgtggaatatcttgctgctgtatcgta |
36031076 |
T |
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| Q |
302 |
atggtatgtgcctctgcttcagtaattac |
330 |
Q |
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| T |
36031077 |
atggtatgtgcctctgcttcagtaattac |
36031105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 207 - 357
Target Start/End: Original strand, 11868789 - 11868942
Alignment:
| Q |
207 |
atggtacattcacagtggccgagggtgattgctcat---ccactgcaataatttcgtgattcacttcctcttgtggaatatccttttgttgtaccgtaat |
303 |
Q |
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||||||||||| ||||||||||| |||||||||| | ||||||||||||||| |||||||||| |||||| ||||||||| | ||||||||||||||| |
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| T |
11868789 |
atggtacattcgcagtggccgagcgtgattgctcctgttccactgcaataattttgtgattcactgcctcttatggaatatcttgttgttgtaccgtaat |
11868888 |
T |
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| Q |
304 |
ggtatgtgcctctgcttcagtaattactgggtccttatttgtctgtggtgctgc |
357 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |
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| T |
11868889 |
ggtatgtgcctctgcttcagcaattaccgggtccttatttgtctgaggtgctgc |
11868942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 21164035 - 21164084
Alignment:
| Q |
149 |
tccaagtgctgcgttgtatctccttcaatggtgtcgaaccccaaattttg |
198 |
Q |
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|||||||||||| | |||||||||||||||||||| ||||||| ||||| |
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| T |
21164035 |
tccaagtgctgccctatatctccttcaatggtgtcggaccccaagttttg |
21164084 |
T |
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