View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21510_high_5 (Length: 358)
Name: NF21510_high_5
Description: NF21510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21510_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 120 - 350
Target Start/End: Original strand, 37421065 - 37421295
Alignment:
| Q |
120 |
agagagtttagaaattaaaatacaaaagccgatcaaaattgcttgggttatgtggttggaggtcttcaacgcaaagagtagaggtggtccgggggatgag |
219 |
Q |
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| T |
37421065 |
agagagtttagaaattaaaatacaaaagccgatcaaaattgcttgggttatgtggttggaggtcttcaacgcaaagagtagaggtggttcgggggatgag |
37421164 |
T |
|
| Q |
220 |
ggatcagcgcttggtgaaccttgcactactcgataagtggtgtggaaggattgtttctagaggctcgggtctctgaagggatattcttaatgcttggtat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
37421165 |
ggatcagcgcttggtgaaccttgcactactcgataagtggtgtggaaggattgtttatagaggctcgggtttatgaagggatattcttaatgcttggtat |
37421264 |
T |
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| Q |
320 |
gagaaccatatgttcgtctgtgtctgtggtg |
350 |
Q |
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| T |
37421265 |
gagaaccatatgttcgtctgtgtctgtggtg |
37421295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
6 |
accacttattttacataaatatatgtattt |
35 |
Q |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 35442988 - 35443107
Alignment:
| Q |
1 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
35443087 |
T |
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| Q |
101 |
atacaaaatttccaactgca |
120 |
Q |
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|||||||||||||||||||| |
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| T |
35443088 |
atacaaaatttccaactgca |
35443107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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