View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21510_low_2 (Length: 236)
Name: NF21510_low_2
Description: NF21510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21510_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15884550 - 15884329
Alignment:
| Q |
1 |
atgaacatattatattaagtaacgttcaagagagtgtaaaggagaagatgagtaacgagaagaagatgaatcttattacagaggctttcaagaaccgcgg |
100 |
Q |
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| T |
15884550 |
atgaacatattatattaagtaacgttcaagagagtgtaaaggagaagatgagtaacgagaagaagatgaatcttgttacagaggctttcaagcaccgcgg |
15884451 |
T |
|
| Q |
101 |
tattcgtgaatttgctgacatgacttggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgattacagttttgaagagctttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15884450 |
tattcgtgaatttgctgacatgacttggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgattacagttttgaagagctttac |
15884351 |
T |
|
| Q |
201 |
aggttctttctctgttgttgct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
15884350 |
aggttctttctctgttgttgct |
15884329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 17568193 - 17568292
Alignment:
| Q |
113 |
tgctgacatgacttggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgattacagttttgaagagctttacaggttctttctc |
212 |
Q |
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| T |
17568193 |
tgctgacaagacttggaacatcctggagcatgcaattcatgacttatacaaccacaacgttaggaatatcagttttgaagagctttacaggttctttctc |
17568292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 17622501 - 17622445
Alignment:
| Q |
156 |
atatacaatcacaactcttgtgattacagttttgaagagctttacaggttctttctc |
212 |
Q |
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| T |
17622501 |
atatacaatcacaacactaatgatctcaattttgaagagcttcacaggttctttctc |
17622445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 14752204 - 14752099
Alignment:
| Q |
107 |
tgaatttgctgacatgacttggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgattacagttttgaagagctttacaggttc |
206 |
Q |
| |
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||||| || ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||| | |||||||||||||||| |||||| | |
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| T |
14752204 |
tgaatatggtgacaagacttggaacattcttgaacatgcatttcatcagatatacaatcacaacactagtggtctcagttttgaagagcttcacaggtac |
14752105 |
T |
|
| Q |
207 |
tttctc |
212 |
Q |
| |
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|||||| |
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| T |
14752104 |
tttctc |
14752099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 14760332 - 14760233
Alignment:
| Q |
113 |
tgctgacatgacttggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgattacagttttgaagagctttacaggttctttctc |
212 |
Q |
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| T |
14760332 |
tgctgacaagacttggaacatcctggagcatgcaattcatgacttatacaaccacaacgttaggaatatcagttttgaagagctttacaggttctttctc |
14760233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 15197305 - 15197197
Alignment:
| Q |
107 |
tgaatttgctgacatgacttggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgatta----cagttttgaagagctttacag |
202 |
Q |
| |
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||||| || ||||| | ||||||||||||| ||| ||||||||| || |||||||||||||||| || | || || ||||||||||||||||||||| |
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| T |
15197305 |
tgaatatggtgacaaggcttggaacattctggaacatgcaattcgtcggatatacaatcacaacgctag-gaatattctcagttttgaagagctttacag |
15197207 |
T |
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| Q |
203 |
gttctttctc |
212 |
Q |
| |
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|||||||||| |
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| T |
15197206 |
gttctttctc |
15197197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 15217723 - 15217615
Alignment:
| Q |
107 |
tgaatttgctgacatgacttggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgatta----cagttttgaagagctttacag |
202 |
Q |
| |
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||||| || ||||| | ||||||||||||| ||| ||||||||| || |||||||||||||||| || | || || ||||||||||||||||||||| |
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| T |
15217723 |
tgaatatggtgacaaggcttggaacattctggaacatgcaattcgtcggatatacaatcacaacgctag-gaatattctcagttttgaagagctttacag |
15217625 |
T |
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| Q |
203 |
gttctttctc |
212 |
Q |
| |
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|||||||||| |
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| T |
15217624 |
gttctttctc |
15217615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 24400626 - 24400546
Alignment:
| Q |
126 |
tggaacattcttgaagatgcaattcatcagatatacaatcacaactcttgtgattacagttttgaagagctttacaggttc |
206 |
Q |
| |
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||||| |||||||||||||| |||||| |||| || ||||| ||| || ||| | ||||||||||| |||||||||||| |
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| T |
24400626 |
tggaagattcttgaagatgctattcatgagatttataatcataacgctagtggtcttagttttgaagaactttacaggttc |
24400546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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