View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21511_low_1 (Length: 480)
Name: NF21511_low_1
Description: NF21511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21511_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 13511800 - 13511410
Alignment:
| Q |
18 |
tatttataggctaagtactactacattcatgtattacatcataatcatcatattaaatagcaattacatcaaatcattcaagtgttcaaacaaaaatcca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13511800 |
tatttataggctaagtactactacattcatgtattacatcataagcatcatattaaatagcaattacatcaaatcattcaagtgttcaaacaaaaatcca |
13511701 |
T |
|
| Q |
118 |
acaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcatgatcattgggcttctcccatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
13511700 |
acaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcgtgatcatttggcttctcccatca |
13511601 |
T |
|
| Q |
218 |
ttaggtgatggattcccacttcttactcgtttaaaattgtcttaattgaattaggtattggcttggtcaacaaacatttgtcctttagattggacagatt |
317 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |
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| T |
13511600 |
ttaggtgatggtttcccacttcttactcgtttgaaattgtcttaattgaattaggtattgacttggtcaacaaacatttgtcctttagattgaacatatt |
13511501 |
T |
|
| Q |
318 |
atcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattattg |
407 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13511500 |
atcgtggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactgtgattattg |
13511410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 13601331 - 13600941
Alignment:
| Q |
18 |
tatttataggctaagtactactacattcatgtattacatcataatcatcatattaaatagcaattacatcaaatcattcaagtgttcaaacaaaaatcca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13601331 |
tatttataggctaagtactactacattcatgtattacatcataagcatcatattaaatagcaattacatcaaatcattcaagtgttcaaacaaaaatcca |
13601232 |
T |
|
| Q |
118 |
acaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcatgatcattgggcttctcccatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
13601231 |
acaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcgtgatcatttggcttctcccatca |
13601132 |
T |
|
| Q |
218 |
ttaggtgatggattcccacttcttactcgtttaaaattgtcttaattgaattaggtattggcttggtcaacaaacatttgtcctttagattggacagatt |
317 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |
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| T |
13601131 |
ttaggtgatggtttcccacttcttactcgtttgaaattgtcttaattgaattaggtattgacttggtcaacaaacatttgtcctttagattgaacatatt |
13601032 |
T |
|
| Q |
318 |
atcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattattg |
407 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13601031 |
atcgtggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactgtgattattg |
13600941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 315 - 405
Target Start/End: Complemental strand, 16798926 - 16798835
Alignment:
| Q |
315 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
405 |
Q |
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||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
16798926 |
attatcgcggcccaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactctgattat |
16798835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 315 - 405
Target Start/End: Complemental strand, 16840277 - 16840186
Alignment:
| Q |
315 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
405 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
16840277 |
attatcgcggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgattctgattat |
16840186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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