View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21511_low_2 (Length: 428)
Name: NF21511_low_2
Description: NF21511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21511_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 29849644 - 29849886
Alignment:
| Q |
19 |
cgaccaggaatgttctacttcatcagtggagttagtggtcattgtacaagaggccagaaaatgatcatcaaggttttggatgtcgaaccaattacagcac |
118 |
Q |
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| T |
29849644 |
cgaccaggaatgttctacttcatcagtggagttagtggtcattgtacaagaggccagaaaatgatcatcaaggttttggatgtcgaaccaattacagcag |
29849743 |
T |
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| Q |
119 |
catcaccgcaatctgcaaatgagagtgcaccaatagcacagcattctaaagctgctcaaattactcctattactatcacatcattcacactctttacttt |
218 |
Q |
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| T |
29849744 |
catcaccacaatctgcaaatgagagtgcaccaatagcacagcattctaaagctgctcaaattactcctattactatcacatcattcacactctttacttt |
29849843 |
T |
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| Q |
219 |
gtcgatcctgggcatatgcttgaaatactagtttttattggtc |
261 |
Q |
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| T |
29849844 |
gtcaatcctgggcatatgcttgaaatactagtttttattggtc |
29849886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 46120832 - 46120629
Alignment:
| Q |
18 |
acgaccaggaatgttctacttcatcagtggagttagtggtcattgtacaagaggccagaaaatgatcatcaaggttttggatgtcgaacc---aattaca |
114 |
Q |
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| T |
46120832 |
acgaccaggattgttctacttcattagtggtgttagtggtcattgtacaagaggacagaaaatgatcatcaaggttttggatgttgaacctgaaccaaca |
46120733 |
T |
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| Q |
115 |
gcaccatcaccgcaatctgcaaatgagagtgcaccaatagcacagcattctaaagctgctcaaattactcctattactatcacatcattcacactcttta |
214 |
Q |
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| T |
46120732 |
gcatcctcaccacaatctgcaaatgagaatgcaccaatagca---cattctaaagctgctcaaataactcctattactatcacagcgttcacactctttg |
46120636 |
T |
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| Q |
215 |
ctttgtc |
221 |
Q |
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| T |
46120635 |
ctttgtc |
46120629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 46133966 - 46133763
Alignment:
| Q |
18 |
acgaccaggaatgttctacttcatcagtggagttagtggtcattgtacaagaggccagaaaatgatcatcaaggttttggatgtcgaacc---aattaca |
114 |
Q |
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|||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| |
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| T |
46133966 |
acgaccaggattgttctacttcattagtggtgttagtggtcattgtacaagaggacagaaaatgatcatcaaggttttggatgttgaacctgaaccaaca |
46133867 |
T |
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| Q |
115 |
gcaccatcaccgcaatctgcaaatgagagtgcaccaatagcacagcattctaaagctgctcaaattactcctattactatcacatcattcacactcttta |
214 |
Q |
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| T |
46133866 |
gcatcctcaccacaatctgcaaatgagaatgcaccaatagca---cattctaaagctgctcaaataactcctattactatcacagcgttcacactctttg |
46133770 |
T |
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| Q |
215 |
ctttgtc |
221 |
Q |
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||||||| |
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| T |
46133769 |
ctttgtc |
46133763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 29849960 - 29850040
Alignment:
| Q |
335 |
cataggatttggaaggtccttcgtcatcatggtgatattgtttccttttcaatagttagattgtttgtgttgacttttcct |
415 |
Q |
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| T |
29849960 |
cataggatttggaaggtccttcgtcatcatggtgataatgtttccttttcaatagttagattgtttgtgttgacttttcct |
29850040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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