View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21511_low_5 (Length: 341)
Name: NF21511_low_5
Description: NF21511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21511_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 33443793 - 33444100
Alignment:
| Q |
21 |
tgtggttttgcgaggccttactcgccctgcatgaaggagcgtcgttgttctaaattttacccaaaaaagttcatttcaaggacttcctttgatgagagtg |
120 |
Q |
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| T |
33443793 |
tgtggttttgcgagaccttactcgccgtgcatgaaggatcgtcgctgttctaaattttacccaaaaaagttcgtttcaaggacctcctttgatgagagtg |
33443892 |
T |
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| Q |
121 |
gctatcctatttataggcgccgtgatcttggtattgttgtaatgaagaaagatgttcaattggataatcgcagcgttgttccctacaaccctgccttgat |
220 |
Q |
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| T |
33443893 |
gctatcctatttataggcgtcgtgatcttggtattgttgtaatgaagaaggatgttcaactggataatcgcagtgttgttccgtacaatcctaccttgat |
33443992 |
T |
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| Q |
221 |
tatgaagtatcaggcccatgtgaacattgaattatgtaataggtcaaattgcataaaatatttgttcaagtatatcaccaagggtgttgatcgtgtcact |
320 |
Q |
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| T |
33443993 |
tatgaagtaccaggcacatgtgaacattgaattatgtaatagatcaaattgcataaaatatctgttcaagtatatcaccaagggtgttgatcgtgtcact |
33444092 |
T |
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| Q |
321 |
gcttctgt |
328 |
Q |
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|||||||| |
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| T |
33444093 |
gcttctgt |
33444100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 22314250 - 22314206
Alignment:
| Q |
267 |
aattgcataaaatatttgttcaagtatatcaccaagggtgttgat |
311 |
Q |
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| T |
22314250 |
aattgcattaaatatttgttcaagtatattactaagggtgttgat |
22314206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 311
Target Start/End: Complemental strand, 24906197 - 24906106
Alignment:
| Q |
220 |
ttatgaagtatcaggcccatgtgaacattgaattatgtaataggtcaaattgcataaaatatttgttcaagtatatcaccaagggtgttgat |
311 |
Q |
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|||||||||| |||| ||||| || |||||||| || || | ||||||||||| || |||||||| |||||||| |||||||| |||||| |
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| T |
24906197 |
ttatgaagtaccaggggcatgtaaatattgaattttgcaacaaatcaaattgcattaagtatttgtttaagtatattaccaagggagttgat |
24906106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 19674621 - 19674529
Alignment:
| Q |
219 |
attatgaagtatcaggcccatgtgaacattgaattatgtaataggtcaaattgcataaaatatttgttcaagtatatcaccaagggtgttgat |
311 |
Q |
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|||||||||||||| || ||| | |||||||| || || || | ||||||| || || |||||||| ||||||||||| |||||||||||| |
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| T |
19674621 |
attatgaagtatcatgctcatattaacattgagttttgcaacaaatcaaattctatcaagtatttgtttaagtatatcactaagggtgttgat |
19674529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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